DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha5 and nAChRbeta2

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster


Alignment Length:522 Identity:189/522 - (36%)
Similarity:300/522 - (57%) Gaps:54/522 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 IFLLIYL-NLSAKVCL-AGYHEKRLLHDLLDPYNTLERPVLNESDPLQLSFGLTLMQIIDVDEKN 356
            :|||:.| |.:|.:.. |....|||..|||..||.|.|||:|.::.|.:..||.|.|:|:|:.||
  Fly     9 VFLLVPLANSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEVNLKN 73

  Fly   357 QLLVTNVWLKLEWNDMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSADEGFDGTYQTNVVVRN 421
            |::.||:|:|..|.|..|||:..:||||:.|.:|...||.||:::||:.|..::.|..|...::.
  Fly    74 QVMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKATLKY 138

  Fly   422 NGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDETGG--------DIS 478
            .|...:.||.|:||:|::::.:||:|:|.|.||||||||:|.|:||:..|:..|        |::
  Fly   139 TGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVGIDLT 203

  Fly   479 SYVLNGEWELLGVPGKRNEIYYNCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMALLGFT 543
            .:.|:.||::|.||..:||.||....||:.||||.:.:||:||:|..|||:|||.:..:.:|.|.
  Fly   204 EFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLIVPCVALTFLTVLVFY 268

  Fly   544 LPPDSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYH 608
            ||.|||||::|.::||:|||||..::||.:|.||.||||||.|....|.:|:.||.:|:.:||.|
  Fly   269 LPSDSGEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLSVWTTVCVLNIH 333

  Fly   609 HRNADTHEMSEWIRIVFLCWLPWILRMSRPGRPLILEFPTTPCSDTSSERKHQILSDVELKERSS 673
            .|:..||.||..:|.:||.::|.::.|.|....|.....:||.:..::|        :::::   
  Fly   334 FRSPSTHNMSPLVRKLFLHFMPKLMMMRRTQYTLPDYDDSTPSNGYTNE--------IDVRD--- 387

  Fly   674 KSLLANVLDIDDDFRHNCRPMTPGGTLPHNPAFYRTVYGQGDDGSIGPIGSTRMPDAVTHHTCIK 738
                 ::.|...:|:                        ...||:.    ...|.::|.....|.
  Fly   388 -----SISDFPSEFK------------------------DSQDGAY----DNGMQNSVDSDNVIP 419

  Fly   739 SSTEYELGLILKEIRFITDQLRKDDECNDIANDWKFAAMVVDRLCLIIFTMFTILATIAVLLSAP 803
            .:...|:...|:.:|||...::..|:.|:|..||||.:||:||..|.:||:..:..|:|::..:|
  Fly   420 RNLTPEVLQALRAVRFIAQHIKDADKDNEIVEDWKFVSMVLDRFFLWLFTLSCVFGTLAIICQSP 484

  Fly   804 HI 805
            .:
  Fly   485 SL 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 181/496 (36%)
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 187/513 (36%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 93/217 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447304
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.