DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and nAChRalpha1

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster


Alignment Length:590 Identity:219/590 - (37%)
Similarity:319/590 - (54%) Gaps:79/590 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 SWIFLLIYLNLS-AKVCLAGYHEKRLLHDLLDPYNTLERPVLNESDPLQLSFGLTLMQIIDVDEK 355
            |.:|..:::.|. |...||....|||..|||..||.|.|||.|.||.|.:..||.|.|:|||:.|
  Fly     3 SVLFAAVFIALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLK 67

  Fly   356 NQLLVTNVWLKLEWNDMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSADEGFDGTYQTNVVVR 420
            ||::.||||::.||||..|:||..|||||..|.:|...||.||:::||:||..::.|..|..::.
  Fly    68 NQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILH 132

  Fly   421 NNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDL----QLQD----ETGGDI 477
            :.|..::.||.|:||.|:||:.:||||:|.|.||||||||||:.:||    |..|    |.|.|:
  Fly   133 HTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDL 197

  Fly   478 SSYVLNGEWELLGVPGKRNEIYYNCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMALLGF 542
            ..|.::.||:::.||..|||.:|:||.|||:||.|.:.:||:||:|..|||||||.|:.:::|.|
  Fly   198 QDYYISVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVF 262

  Fly   543 TLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNY 607
            .||.|||||:||.::||||||||..::||.:|.||..|||||.|....|.:|..|||.||.:||.
  Fly   263 YLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNV 327

  Fly   608 HHRNADTHEMSEWIRIVFLCWLPWILRMSRPGRPLILEFPTTPCSDTSSERKHQILSDV-ELKER 671
            :.|:..||.|:.|::.:|:..||.:|.:.||.:           .:...::..::|:|| .|.. 
  Fly   328 NFRSPVTHRMAPWVQRLFIQILPKLLCIERPKK-----------EEPEEDQPPEVLTDVYHLPP- 380

  Fly   672 SSKSLLANVLDIDDDFRHNCRPMTPGGTLPHNPAFYR-----------------------TVYGQ 713
                      |:|....::.:..:....:|..||.:|                       .:.|.
  Fly   381 ----------DVDKFVNYDSKRFSGDYGIPALPASHRFDLAAAGGISAHCFAEPPLPSSLPLPGA 435

  Fly   714 GDD-----GSIGPIGSTRMPDAVTHHTCIKSST-----EYELGLILKEIRFITDQLRKDDECNDI 768
            .||     |..|.|.....|.|........|.|     ..|:...::..|||...::..|:...:
  Fly   436 DDDLFSPSGLNGDISPGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESV 500

  Fly   769 ANDWKFAAMVVDRLCLIIFTMFTILATIAVLLSAPHII-VSXPYGRGGYCYWFYYKINLLIIKLI 832
            ..|||:.|||:||:.|.||.:..::.|..::|.||.:. .|.|             |::|..|:.
  Fly   501 EEDWKYVAMVLDRMFLWIFAIACVVGTALIILQAPSLYDQSQP-------------IDILYSKIA 552

  Fly   833 TKLFK 837
            .|.|:
  Fly   553 KKKFE 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 204/530 (38%)
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 105/214 (49%)
LIC 27..530 CDD:273305 202/524 (39%)
Neur_chan_memb 247..530 CDD:280999 94/304 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447316
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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