DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and chrna7a

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_957513.1 Gene:chrna7a / 394199 ZFINID:ZDB-GENE-040108-3 Length:509 Species:Danio rerio


Alignment Length:520 Identity:245/520 - (47%)
Similarity:337/520 - (64%) Gaps:29/520 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   293 WIFLLIYLNLSA--KVCLAGYHEKRLLHDLLDPYNTLERPVLNESDPLQLSFGLTLMQIIDVDEK 355
            |.:.|.:.....  .|.|.|.|::||..||:..||.|||||.|::..|.:.|.::||||:|||||
Zfish     4 WEYTLYFTTTCCLWSVSLQGEHQRRLYRDLMKDYNPLERPVFNDTHSLTVYFSMSLMQIMDVDEK 68

  Fly   356 NQLLVTNVWLKLEWNDMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSADEGFDGTYQTNVVVR 420
            ||:|.||:||:|.|.|..|:||.|:|.||.::|.|..:|||||:|:||||||.||.|:.|||:|.
Zfish    69 NQVLTTNIWLQLYWYDYYLQWNASEYPGVTNVRFPDSQIWKPDILLYNSADERFDATFHTNVLVN 133

  Fly   421 NNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDETGGDISSYVLNGE 485
            ::|:|.|:|||||||||.||:.|||||.|||::|||||||.|:.||||:.|   .||:.|:.|||
Zfish   134 SSGACQYLPPGIFKSTCYIDVRWFPFDLQRCDLKFGSWTYGGWSLDLQMID---ADITGYIANGE 195

  Fly   486 WELLGVPGKRNEIYYNCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMALLGFTLPPDSGE 550
            |:|:.|||:|||.:|:||.|||.|:||.:::|||||||..||:||||||:::|||.|.||.||||
Zfish   196 WDLVEVPGRRNERFYDCCKEPYPDVTFTVVMRRRTLYYGLNLLIPCVLISTLALLVFLLPADSGE 260

  Fly   551 KLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNADTH 615
            |:|||:|:|||||||:.:|||.||||||:|||:..||...|.:|..||::|:.:|.||:.:.:..
Zfish   261 KISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFATTMVIVGLSVIATVWVLQYHYHDPEGG 325

  Fly   616 EMSEWIRIVFLCWLPWILRMSRPGRPLILEFPTTPCSDTSSERKHQILSDVELKERSSKSLLANV 680
            :|.:|.|:|.|.|..|.|||.|||     |....|.......|......|:.:....::|...|:
Zfish   326 KMPKWTRVVLLNWCAWFLRMKRPG-----EDKVRPACHNKQPRSSLSSVDLNISPGVAQSTNGNL 385

  Fly   681 LDID----DDFRHNCRPMTPGGTLPHNPAFYRTVYGQGDDGSIGPIGSTRMPDAVTHHTCIKSST 741
            |.|.    |...:        .|.|.:......:...|::..:       :|.|...........
Zfish   386 LYIGFRGMDTIHY--------ATSPDSGVICSRLVATGEEDVL-------LPGAQASSVSSSGPG 435

  Fly   742 EYELGLILKEIRFITDQLRKDDECNDIANDWKFAAMVVDRLCLIIFTMFTILATIAVLLSAPHII 806
            |.||..||.|:|:|:.:.|..||.:.:.|:|||||.|:|||||:.|::||||.||.:|:|||:.:
Zfish   436 ETELSKILDEVRYISKRFRDQDEEDTVCNEWKFAASVIDRLCLMAFSLFTILCTIGILMSAPNFV 500

  Fly   807  806
            Zfish   501  500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 236/492 (48%)
chrna7aNP_957513.1 LIC 3..496 CDD:273305 242/514 (47%)
Neur_chan_LBD 26..230 CDD:280998 121/206 (59%)
Neur_chan_memb 237..492 CDD:280999 108/274 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 288 1.000 Domainoid score I1532
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H593
Inparanoid 1 1.050 510 1.000 Inparanoid score I1280
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D363540at33208
OrthoFinder 1 1.000 - - FOG0000891
OrthoInspector 1 1.000 - - mtm6506
orthoMCL 1 0.900 - - OOG6_104534
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X767
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.970

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