DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and Rdl

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster


Alignment Length:446 Identity:92/446 - (20%)
Similarity:162/446 - (36%) Gaps:103/446 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   300 LNLSAKVCLAGYHEKRLLHDLLDPYNTLERPVLNESDPLQLSFGLTLMQIIDVDEKNQLLVTNVW 364
            :|:||           :|......|:...||... ..|:::...:.::.|..:.|.......:.:
  Fly    57 VNISA-----------ILDSFSVSYDKRVRPNYG-GPPVEVGVTMYVLSISSLSEVKMDFTLDFY 109

  Fly   365 LKLEWNDMNLRWNTSDYGGVKDLRIPPH---RIWKPDVLMYNSADEGFDGTYQTNVVVR--NNGS 424
            .:..|.|..|.:....  ||:.|.:...   .||.||....|.....|.....:|..:|  ::||
  Fly   110 FRQFWTDPRLAYRKRP--GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGS 172

  Fly   425 CLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDETGGDISSYVLNGEWEL- 488
            ..........::|.:::.:||.|.|.|.::..|:.|.  ..|::.....|  :||..::.|.|| 
  Fly   173 ITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYT--MRDIRYFWRDG--LSSVGMSSEVELP 233

  Fly   489 ----LGVPGKRNEIYYNCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMALLGFTLPPD-S 548
                ||...:..||  |.....|..:...|...|...||...:.||..||..::.:.|.|..: :
  Fly   234 QFRVLGHRQRATEI--NLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNAT 296

  Fly   549 GEKLSLGVTILLSLTVFLNMVAETMPATSDAVPL---LGTYFNCIMFMVASSVVSTILILNYHHR 610
            ..:::||||.:|::|..::.....:|..|....:   |||   |.:.:.||       :|.|   
  Fly   297 PARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGT---CFVMVFAS-------LLEY--- 348

  Fly   611 NADTHEMSEWIRIVFLCWLPWILRMSRPGRPLILEFPTTPCSDTSSERKHQILSDVELKERSSKS 675
             |....|::.|::                                  ||.:.::..::.|:..:.
  Fly   349 -ATVGYMAKRIQM----------------------------------RKQRFMAIQKIAEQKKQQ 378

  Fly   676 LLANVLDIDDDFRHNCRPMT----PGGTLPHNPAFYRTVYGQGDDGSIGPIGSTRM 727
                 ||..:..:.|..|..    |||.            |.|..|..||.|...:
  Fly   379 -----LDGANQQQANPNPNANVGGPGGV------------GVGPGGPGGPGGGVNV 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 89/433 (21%)
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 40/190 (21%)
Neur_chan_memb 274..588 CDD:397193 41/209 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447322
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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