DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and lgc-8

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001023533.2 Gene:lgc-8 / 3564870 WormBaseID:WBGene00013338 Length:438 Species:Caenorhabditis elegans


Alignment Length:444 Identity:125/444 - (28%)
Similarity:203/444 - (45%) Gaps:72/444 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 LNKHSW-IFL---LIYLNLSAKVCLAGYHEKRLLHD-LLDPYNTLERPVLNESDPLQLSFGLTLM 347
            :|.|.: :||   ||..||   :.:.|......|.| |::.|::..|||:||.|.|.::..:..|
 Worm     1 MNFHDYKLFLHSVLILWNL---LEIDGITVSEQLKDVLMEGYDSSIRPVINERDTLFINISINSM 62

  Fly   348 QIIDVDEKNQLLVTNVWLKLEWNDMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSADEG---- 408
            ..:.:|...:.:..:....|:|.|..|.||.||| .:..|::....:|.||..:..|.|..    
 Worm    63 SFLTLDPAEETINFSGEFILQWKDEFLFWNKSDY-NITWLKLKESFLWTPDTTVSTSIDTNYLIE 126

  Fly   409 ---------FDGTYQTNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQ 464
                     :|||.:.|:.            .:|.:.|.::|..||:|.|.|.:|.|.|:|    
 Worm   127 TSERYVSVKYDGTVRQNIY------------AVFTNLCDMNINEFPYDQQTCMIKMGPWSY---- 175

  Fly   465 LDLQLQDET---GGDI------SSYVLNGEWELLGVPGKRNEIYYNCCPEPYIDIT-----FAII 515
               .:::.|   ||||      ..:..|.||:..|:.....|     ..:|.::.|     ||:.
 Worm   176 ---TMKEVTCIVGGDIERNETTGKFQGNSEWDFEGIVSSVGE-----TEDPDVNFTFSEVHFALT 232

  Fly   516 IRRRTLYYFFNLIIPCVLIASMALLG-FTLPPDSG---EKLSLGVTILLSLTVFLNMVAETMPAT 576
            ::||..:|.:.|:||..:|..:.:.| ||...:.|   |:::||:|.|||..|.|.:||..||.|
 Worm   233 VKRRPQFYVWVLLIPTYIITVVCIFGLFTPTANHGLREERVNLGITTLLSSAVILQIVANAMPKT 297

  Fly   577 SDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNADTHEMSEWIRIVFLCWLPWILRMSRPGRP 641
            |: :||||.:....:|:||..|:..:|:|..|.| |.|.|...      ..|:.|||||:...:.
 Worm   298 SE-LPLLGNFILAEIFVVAIGVLFAVLVLTLHQR-AHTREWRP------PAWMLWILRMTGSSKF 354

  Fly   642 LILEFPTTPCSDTSSERKHQILSDVELKERSSKSLLANVLDIDDDFRHNCRPMT 695
            |...........:::||.|.......|.:...:||.:....|.::.|...|.:|
 Worm   355 LSRNITKIRHKSSTAERIHYTGEGAYLFKNLDESLQSVREYIQEEDRDYFRELT 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 116/415 (28%)
lgc-8NP_001023533.2 Neur_chan_LBD 29..237 CDD:280998 59/232 (25%)
Neur_chan_memb 244..>348 CDD:280999 42/111 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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