DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and Chrna9

DIOPT Version :10

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001074573.1 Gene:Chrna9 / 231252 MGIID:1202403 Length:479 Species:Mus musculus


Alignment Length:112 Identity:27/112 - (24%)
Similarity:46/112 - (41%) Gaps:31/112 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   415 GEAVKM---EFLKEKIREEF-KIECYTPANGE--TCTISTPIKI---------PVETSLSILKDE 464
            |.|||.   :..|:.:.|:: .:|.:...:|.  .||:|....|         |...|..:|...
Mouse    28 GAAVKNSLDDAAKKVLIEKYGYLESFNLVDGRLFICTVSCLFTIVALIWDYLHPFPESKPVLACC 92

  Fly   465 VKKYNAQPPDPKRRRIIHGILVM----KDNKISLMSIDEIFNEAGID 507
            |..|          .|:.|||.:    |:..|.|:::.:  :.||:|
Mouse    93 VVSY----------FIMMGILTLYTSYKEKNIFLVAMQK--DPAGMD 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:455710 27/112 (24%)
Chrna9NP_001074573.1 LIC 10..474 CDD:455710 27/112 (24%)
LGIC_ECD_nAChR_A9 31..237 CDD:349823 25/109 (23%)
Cys-loop 155..169 CDD:349823
Blue background indicates that the domain is not in the aligned region.

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