DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and HTR3D

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001157118.1 Gene:HTR3D / 200909 HGNCID:24004 Length:454 Species:Homo sapiens


Alignment Length:345 Identity:80/345 - (23%)
Similarity:133/345 - (38%) Gaps:60/345 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   330 PVLNESDPLQLSFGLTLMQIIDVDEKNQLLVTNVWLKLEWNDMNLRWNTSDYGGVKDLRIPPHRI 394
            ||.|.|....::...||..|.:.  .:::...|......|::..::||..:.||:|...:....:
Human    55 PVTNYSVATHVNISFTLSAIWNC--YSRIHTFNCHHARPWHNQFVQWNPDECGGIKKSGMATENL 117

  Fly   395 WKPDVLMYNSADEGFDGTYQTNVVVRNNGSCLYVPPGIFKSTC--KIDITWFP-----FDDQRCE 452
            |..||.:..|.|:...|...:..:|:...:.:        |.|  .....|.|     .|..|  
Human   118 WLSDVFIEESVDQTPAGLMASMSIVKATSNTI--------SQCGWSASANWTPSISPSMDRAR-- 172

  Fly   453 MKFGSWTYDGFQLDLQLQDETGGDISSYVLNGEWELLGVPGKRNEIYYNCCPEPYIDITFAIIIR 517
                :|.  ......|:...|     |:....||.|||:  ::..|........|....|.:.||
Human   173 ----AWR--RMSRSFQIHHRT-----SFRTRREWVLLGI--QKRTIKVTVATNQYEQAIFHVAIR 224

  Fly   518 R--RTLYYFFNLIIPCVLIASMALLGFTLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATSDA- 579
            |  |...|..|.::|..::.::..|.|.||.:||......:|:||..:|||.|:.:.:||||.: 
Human   225 RRCRPSPYVVNFLVPSGILIAIDALSFYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSS 289

  Fly   580 ------------VPL-LGTYFNCIMFMVASSVVSTILILN-YHHRNADTHEMSEWIRIVFLCWLP 630
                        .|| .|.||...:.::..|::.||.|.: .|........:..|:..:      
Human   290 HASLVAPLALMQTPLPAGVYFALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSL------ 348

  Fly   631 WILRMSRPGRPLILEFPTTP 650
             :|..:..||..    ||.|
Human   349 -LLHCTGQGRCC----PTAP 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 80/345 (23%)
HTR3DNP_001157118.1 Neur_chan_LBD 55..>130 CDD:280998 18/76 (24%)
LIC 92..452 CDD:273305 72/306 (24%)
Neur_chan_memb 237..>351 CDD:280999 29/120 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 363..410 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.910

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