DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and acr-17

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001023961.1 Gene:acr-17 / 191603 WormBaseID:WBGene00000056 Length:515 Species:Caenorhabditis elegans


Alignment Length:534 Identity:157/534 - (29%)
Similarity:253/534 - (47%) Gaps:74/534 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 SWIFLLIYLNLSAKVCLAGYHEKRLLHDLLDPYNTLERPVLNESD-PLQLSFGLTLMQIIDVDEK 355
            |:..||..:.|...:.||...:|:|:..|...|:...|||.:||. |..::..|...||..|.|.
 Worm     3 SFQLLLRIVVLHFLMGLAMAQQKQLIKYLFRDYHKELRPVKDESSGPTNVTVQLYFKQIQKVHEN 67

  Fly   356 NQLLVTNVWLKLEWNDMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSADEGF-DGTYQTNVVV 419
            :|::....|::..|.|..|.||.||:|.:|.|.:|...|||||:|:||:|:... :...||||.:
 Worm    68 DQIITLYCWIEEYWQDEFLTWNPSDFGNIKSLHVPSEMIWKPDLLVYNNANMNIKENEMQTNVQI 132

  Fly   420 RNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQD---ETGGDISS-- 479
            .:.|........|...||.:.:..||:|.|.|.:...||:|||.|:.|...:   |...||.:  
 Worm   133 EHTGKISLFRAIITDITCDLQMEKFPYDQQICFIMLASWSYDGSQIMLNTAEQPTEAPLDIKNTT 197

  Fly   480 -------YVLNGEWELLGVPGKRNEIYYNCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASM 537
                   |:.|.||:|:....:.|..||:|||.||.||::...|:|...||.|.||||...|..:
 Worm   198 NLAILNHYIPNMEWKLVDFRYRNNLKYYDCCPNPYPDISYFFAIKRNPSYYLFTLIIPSAFITIV 262

  Fly   538 ALLGFTLPPDS----GEKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSV 598
            .::||..|..|    .||:|||||.||||.:.|.||::.:||||::|||||.|:..::|::..:.
 Worm   263 TVIGFFTPHSSTGENTEKVSLGVTALLSLAIILMMVSDKLPATSNSVPLLGQYYIGLIFIMFLAT 327

  Fly   599 VSTILILNYHHRNADTHEMSEWIRIVFLCWLPWILRMSRP-------GRPLILEFPTTPCSDTSS 656
            ..|...|....:......::..:|...|.     :||:|.       ||.|:    .|..|....
 Worm   328 YCTTFTLGIQMQGNAGRPITRRLRSFLLS-----IRMNRNSFVQWFFGRELM----NTQESIKMR 383

  Fly   657 ERKHQILSDVELKERSSKSLL---ANVLDIDDDFRHNCRPMTPGGTLPHNPAFYRTVYGQGDDGS 718
            .:|:..||  |||::.:...:   ..:|..|:. :||     ...:|....:             
 Worm   384 LKKYDKLS--ELKKKFANGFVQFQQKLLKTDEP-KHN-----KTASLIEQES------------- 427

  Fly   719 IGPIGSTRMPDAVTHHTCIKSSTEYELGLILKEIRFITDQLRKDDECNDIANDWKFAAMVVDRLC 783
               |.|:::.|...::..:.         :|..::.|...|...:....|..:|:..|.:::::.
 Worm   428 ---IDSSKLLDPAMYNVVVD---------VLSSVQSIRQDLTSQEHLKRIRKEWQMLARMLEKII 480

  Fly   784 LIIFTMFTILATIA 797
            :.||    |::|:|
 Worm   481 MWIF----IISTVA 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 151/513 (29%)
acr-17NP_001023961.1 LIC 23..491 CDD:273305 151/514 (29%)
Neur_chan_LBD 24..245 CDD:280998 77/220 (35%)
Neur_chan_memb 252..491 CDD:280999 71/285 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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