DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and lgc-12

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_498656.3 Gene:lgc-12 / 187855 WormBaseID:WBGene00020048 Length:428 Species:Caenorhabditis elegans


Alignment Length:412 Identity:112/412 - (27%)
Similarity:195/412 - (47%) Gaps:44/412 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 ILNGLNKHSWIFLLIYLNLSAKVCLAGYHEKRLLHDLLDPYNTLERPVLNESDPLQLSFGLTLMQ 348
            |||.||.   |......|.:.::.....:|:.|:..|:..|....|||.|.|..|.::....:..
 Worm     3 ILNNLNN---IQEENTSNFTIEIEYPEINERELVKHLMKDYYQFTRPVKNYSSMLTVTIMPQIYN 64

  Fly   349 IIDVDEKNQLLVTNVWLKLEWNDMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSADEGFDGTY 413
            :::|:|:|:.:...:|....|.|..|.|:..::.|::.:.||...:|.||..::|:.:| .|...
 Worm    65 LVEVNEQNEQIKLLIWFPQSWKDDYLVWDPDEWDGIEKITIPKSMVWLPDGYIFNTVEE-TDTLD 128

  Fly   414 QTNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDETGGDIS 478
            ..||.|..||........:....|.:.:..||||.|.|.::||||||....|...:.:   ..::
 Worm   129 NHNVRVHYNGKVEVDFNKLIDLICPMSVLSFPFDVQLCALQFGSWTYQSHALSFNVLE---ASVN 190

  Fly   479 SYVLNGEWELLGVPG-KRNEIYYNCC--PEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMALL 540
            ....|.||:::.... |:...|.|..  ...|.:|.:.:.:||:.|||...::||..||.:::.:
 Worm   191 ENNKNSEWDIVAFNATKKVSKYMNLIGGDNVYEEIFYFLEVRRKPLYYIVVILIPTFLIVTVSNI 255

  Fly   541 GFTLP----PDSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVST 601
            |...|    .|..|.:|||:|.:|::.|.|:||...||.:|:.:||||.|......:...:|:.:
 Worm   256 GLFTPHGVHGDREEHVSLGLTTMLTMAVILDMVTGQMPKSSEGIPLLGMYVLIEFALSIMAVLVS 320

  Fly   602 ILILNYHHRNADTHEMSEWIRIVFLCWLP--WILRMSRPGR---PLI-LEFPTTPCS--DTSSE- 657
            :||:..|.            |::::..:|  ||.|:....:   ||. :|:.....|  |.:.| 
 Worm   321 VLIIFAHE------------RMLYMDAMPPFWIFRLFSKHKNQIPLAEMEYDDLRSSPVDLAQEL 373

  Fly   658 -------RKHQILSDVELKERS 672
                   |||  |.|::.|:::
 Worm   374 RFCIEKVRKH--LEDLDSKDKN 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 105/383 (27%)
lgc-12NP_498656.3 Neur_chan_LBD 29..235 CDD:280998 56/209 (27%)
Neur_chan_memb 242..>345 CDD:280999 34/114 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D845098at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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