| Sequence 1: | NP_001356885.1 | Gene: | nAChRalpha5 / 34826 | FlyBaseID: | FBgn0028875 | Length: | 837 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001256671.1 | Gene: | lgc-31 / 184752 | WormBaseID: | WBGene00008997 | Length: | 675 | Species: | Caenorhabditis elegans |
| Alignment Length: | 536 | Identity: | 138/536 - (25%) |
|---|---|---|---|
| Similarity: | 228/536 - (42%) | Gaps: | 81/536 - (15%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 315 RLLHDLLDPYNTLERPVLNESDPLQLSFGLTLMQIIDVDEKNQLLVTNVWLKLEWNDMNLRWNTS 379
Fly 380 DYGGVKDLRIPPHRIWKPDVLMYNSADEGFDGTYQTNVVVRNN--GSCLYVPPGIFKSTCKIDIT 442
Fly 443 WFPFDDQRCEMKFGSWTYDGFQLDLQLQDETGGDISSYVLNGEWELLGVPGKRNEIYYNCCPEPY 507
Fly 508 ID-------ITFAIIIRRRTLYYFFNLIIPCVLIASMALLGFTLPPDSGE----KLSLGVTILLS 561
Fly 562 LTVFLNMVAETMPATS-----------DAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNADTH 615
Fly 616 EMSEWIRIVFLCWLPWILRMSRPGRPLILEFP---TTPCSDTSSERKHQILSDVELKERSSKSLL 677
Fly 678 ANVLDIDDDFRHNCRPMT------PGGTLPHNPAFYRTVYGQGDDGSIGPIGSTRMPDAVTHHTC 736
Fly 737 IKSSTEYELGL------------ILKEIR-----FITDQLRKDDECNDIANDWKFAAMVVDRL-C 783
Fly 784 LIIFTMFTILATIAVL 799 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| nAChRalpha5 | NP_001356885.1 | LIC | 313..802 | CDD:273305 | 138/536 (26%) |
| lgc-31 | NP_001256671.1 | TM_EphA1 | <43..>79 | CDD:391457 | |
| LGIC_ECD_cation | 153..339 | CDD:349790 | 52/189 (28%) | ||
| LGIC_TM_cation | 341..>442 | CDD:349853 | 31/101 (31%) | ||
| TM1 helix | 345..365 | CDD:349853 | 8/19 (42%) | ||
| Neur_chan_memb | 347..634 | CDD:367256 | 71/312 (23%) | ||
| TM2 helix | 377..398 | CDD:349853 | 7/20 (35%) | ||
| TM3 helix | 420..442 | CDD:349853 | 4/22 (18%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 2 | 1.910 | |||||