DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and lgc-6

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_501410.3 Gene:lgc-6 / 184621 WormBaseID:WBGene00017544 Length:425 Species:Caenorhabditis elegans


Alignment Length:355 Identity:94/355 - (26%)
Similarity:167/355 - (47%) Gaps:39/355 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   293 WIFLLIYLNLSAKVCLAGYHEKRLLHDLLD-PYNTLERPVLNESDPLQLSFGLTLMQ----IIDV 352
            ||...    |:|...|...:.:.||..|.: .|:...:|    ||.|.:   :|:..    ::.:
 Worm     3 WILRF----LTAVAFLETSNTETLLQQLFNQTYDVDMKP----SDDLTM---VTITPNTFILLSM 56

  Fly   353 DEKNQLLVTNVWLKLEWNDMNLRWNTSDYGGVKD-LRIPPHRIWKPDVLMYNSADEG--FDGTYQ 414
            |:..:.:..:....|.|.|..|.||.|......| ::|...|.|.|||:..|..|..  .|...|
 Worm    57 DQTQETIQYSEEFLLRWYDPILHWNQSAVSYENDWIKISASRAWIPDVIFTNGIDMDPLLDKDMQ 121

  Fly   415 TNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQ-----LQDETG 474
            . ..:|.||......|.:..|.|.::|..||:|.|:|.:..|||.:|...|.:|     :..:.|
 Worm   122 M-ADLRYNGEIRTSRPAVVSSPCPLEIDNFPYDVQKCNISMGSWAFDRRFLSVQSSTIEILPQKG 185

  Fly   475 GDISSYVLNGEWELLGVPGKRNEIYYNCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMAL 539
                .:..|.||||:.:...|::.|.....|.:.:||:.:.::|:.:||...:..|..::.::.:
 Worm   186 ----RFEGNSEWELISILTVRSDSYDTLLEEWFSEITYVVTLKRKPVYYVLVIQAPTFILCTITI 246

  Fly   540 LG-FTLPPDSGE-----KLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSV 598
            .| ||  |:|.|     |:.|.:.:..::::.|.:|::.||..| .:||||.|....:|:|.::.
 Worm   247 FGLFT--PNSNEDERLSKVELCLNMFAAISMMLQLVSDMMPKAS-RLPLLGNYIIAEIFVVTAAT 308

  Fly   599 VSTILI-LNYHHRNADTHEMSEWIRIVFLC 627
            :::|:| ..:||.:........|:|.:.||
 Worm   309 IASIIIQQTHHHVHTSAIRPRRWLRCLVLC 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 89/335 (27%)
lgc-6NP_501410.3 LIC 1..424 CDD:273305 94/355 (26%)
LGIC_ECD_cation 42..226 CDD:349790 49/191 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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