DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and lgc-10

DIOPT Version :10

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001293778.1 Gene:lgc-10 / 177409 WormBaseID:WBGene00022247 Length:450 Species:Caenorhabditis elegans


Alignment Length:343 Identity:91/343 - (26%)
Similarity:165/343 - (48%) Gaps:23/343 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 IFLLIYLNLSAKVCLAGYHE-KRLLHDLLDPYNTLERPVLNESDPLQLSFGLTLMQIIDVDEKNQ 357
            :|.|:.:|  ..:|:  ::| ..:|:|:...|:....|.:  ..|:.::..:.|..:|::.|..|
 Worm    11 LFSLLLVN--ETMCV--HNETSAILNDIFVGYDRRVLPFV--QGPVLVNMTIVLGILIELKENQQ 69

  Fly   358 LLVTNVWLKLEWNDMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSADEGFDGTYQTNVVVR-- 420
            |....:.....|.|..|.|:.|.|.|.:::.:|...:|.|.:.:|||. |..|...:....||  
 Worm    70 LAAYVISHTQRWYDGRLSWDPSKYRGQREVIVPQTMVWIPKLFVYNSL-ESKDMLTENRADVRLY 133

  Fly   421 NNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDETGGDISSYVL-NG 484
            :||......|...::.|:|....||||.|.|.:...|   ....::..:.:.|.....||.. |.
 Worm   134 HNGRIKINIPQYVQAICRIQTESFPFDCQFCAVALAS---PLLNVNEMVVNATQPPRDSYFSGNA 195

  Fly   485 EWELLGVPGKRNEIYYNCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMALLGFTLPPDS- 548
            ||.|..|..:  .:.:....|..::|.:...::||.:||...::.|..||:::::||...|..: 
 Worm   196 EWYLFNVTVR--HMTFEEEGESRVEIHYVFHLQRRPIYYITVIVAPTFLISALSILGIFSPGSND 258

  Fly   549 ---GEKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILIL--NYH 608
               .||:|||:..||::||.|.:||..||.::| :||||.|...::.:.|.:|..:::.|  ..|
 Worm   259 GPRNEKVSLGLGSLLAMTVLLGIVAGAMPKSND-IPLLGYYILAVIVLCAVAVAISMMFLAVTRH 322

  Fly   609 HRNADTHEMSEWIRIVFL 626
            :...:.......:|.:||
 Worm   323 YIQKEQMPSKRILRFLFL 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:455710 87/324 (27%)
lgc-10NP_001293778.1 LGIC_TM_cation 231..>317 CDD:349853 30/86 (35%)
TM1 helix 231..254 CDD:349853 7/22 (32%)
TM2 helix 266..287 CDD:349853 10/20 (50%)
TM3 helix 297..317 CDD:349853 3/19 (16%)
LGIC_ECD_cation 50..228 CDD:349790 44/183 (24%)
Cys-loop 150..164 CDD:349790 7/13 (54%)

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