DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and cup-4

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_498710.2 Gene:cup-4 / 176104 WormBaseID:WBGene00000845 Length:433 Species:Caenorhabditis elegans


Alignment Length:415 Identity:77/415 - (18%)
Similarity:153/415 - (36%) Gaps:135/415 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 HEKRLLHDLLDPYNTLERPVLNESDPLQLSFGLTLMQI------IDVDEKNQLLVTNVWLKLEWN 370
            |:..|...:...||...||:.|.|.|       |::.:      :.::::.|.:..:..:.:.|.
 Worm    47 HQSALEQKIFRGYNPKNRPMKNASFP-------TIVDVHWHIIHVSINQREQTMTVHGHIYMRWF 104

  Fly   371 DMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSAD---EGFDGTYQTNVVVRNNGSC-----LY 427
            |..|.|:..|:..::..|:...::|:|.:.:.|||.   ..||.:...:|:::..|..     :|
 Worm   105 DEFLVWDPKDFNNIQYARVKKWQVWQPKIKVSNSASGLGSAFDFSTSAHVIIQMMGKDRAKVEMY 169

  Fly   428 VPPGIFKSTCKIDITWFPFDDQRCEMK-FGSWTYDGFQL------------------------DL 467
             |....|..|..|.|.:|:|..:|.:. |.:.|....||                        |.
 Worm   170 -PTFSIKVGCAFDFTDYPYDLNKCAINLFSTSTMADVQLQNLYAIPPTLSFGWEEQKMKRIISDF 233

  Fly   468 QLQD-------ETGGDISS------YVLNGEWELLGVPGKRNEIYYNCCPEPYIDITFAIIIRRR 519
            ::|:       .|.|:|:|      :.|...|.:|.|                 .::|.    |.
 Worm   234 KIQNVSSSALYYTNGNITSSAPITGFDLGSTWSMLAV-----------------TVSFV----RH 277

  Fly   520 TLYYFFNLIIPCVLIASMALLGFTLPPDSGEKLSLGVTILLSL------TVFLNMVAETMPATSD 578
            :..:...::.||:::||:..:.|.:.       ||..|.||.:      .:||:.:.|.:|.:..
 Worm   278 SPLFEAAVVTPCIVVASLISMTFFID-------SLSSTFLLMMLHFYVQLIFLHDLVEKLPLSVS 335

  Fly   579 AVP-----------------------LLGTYFNC-------IMFMVASSVVSTI---LILNYHHR 610
            .:|                       |.|:|:.|       .:|::...:.:|.   :.:.....
 Worm   336 EIPFCIKLIGILMYTNGLTLVLHSSLLCGSYYKCPVPQQLNKIFVIEEYIPNTFKEKVQIKKEES 400

  Fly   611 NADTHEMSEWIR--------IVFLC 627
            |....::.:.||        |:.:|
 Worm   401 NKSWRDLMKLIRPIIGFVLIILLIC 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 76/414 (18%)
cup-4NP_498710.2 Neur_chan_LBD 48..>222 CDD:280998 38/181 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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