DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha5 and Chrnb4

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_683746.1 Gene:Chrnb4 / 108015 MGIID:87892 Length:495 Species:Mus musculus


Alignment Length:519 Identity:195/519 - (37%)
Similarity:295/519 - (56%) Gaps:57/519 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   297 LIYLNLSAKV----CLAGYHEKRLLHDLLDP--YNTLERPVLNESDPLQLSFGLTLMQIIDVDEK 355
            |:.::|.|.:    |.....|::|:.|||:.  ||.|.||..:.|..:.:...|:|.|:|.|:|:
Mouse     6 LLLVSLFALLQPGDCRLANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIRLELSLSQLISVNER 70

  Fly   356 NQLLVTNVWLKLEWNDMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSADEGFDGTYQTNVVVR 420
            .|::.|::|||.||.|..|.||:|.|.||..||||..|:|.||:::||:||..::.:..|||:||
Mouse    71 EQIMTTSIWLKQEWTDYRLAWNSSCYEGVNILRIPAKRVWLPDIVLYNNADGTYEVSVYTNVIVR 135

  Fly   421 NNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDETGGDISSYVLNGE 485
            :|||..::||.|:||.|||::..||||.|.|.:||.|||||..::|:.|:..| ..:..:..:||
Mouse   136 SNGSIQWLPPAIYKSACKIEVKHFPFDQQNCTLKFRSWTYDHTEIDMVLKSPT-AIMDDFTPSGE 199

  Fly   486 WELLGVPGKRNEIYYNCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMALLGFTLPPDSGE 550
            |:::.:||:|.   .|.....|:|:|:..||:|:.|:|..|||||||||.|:|:|.|.||.|.||
Mouse   200 WDIVALPGRRT---VNPQDPSYVDVTYDFIIKRKPLFYTINLIIPCVLITSLAILVFYLPSDCGE 261

  Fly   551 KLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNADTH 615
            |::|.:::||:||.||.::::.:|.||..:||:|.|....|.:|..|:|:|:.:||.|||:..||
Mouse   262 KMTLCISVLLALTFFLLLISKIVPPTSLDIPLIGKYLLFTMVLVTFSIVTTVCVLNVHHRSPSTH 326

  Fly   616 EMSEWIRIVFLCWLPWILRMSRPGRPLILEFPTTPCSDTSSERKHQILSDVELKERSSKSLLANV 680
            .|:.|::..||..||..|.|.|||    ||  .:|.....|.:.|     :...|.:|.|.|.  
Mouse   327 TMASWVKECFLHKLPTFLFMKRPG----LE--VSPARVPHSSQLH-----LTTAEATSTSALG-- 378

  Fly   681 LDIDDDFRHNCRPMTPGGTLPHNPAFYRTVYGQGDDGSIGPIGSTRMPDAVTHHTC-------IK 738
                        |.:|.....::..|            :.|:.:| ...||:.||.       ::
Mouse   379 ------------PSSPSNLYGNSMYF------------VNPVPAT-PKSAVSSHTAGLPRDARLR 418

  Fly   739 SSTEY--ELGLILKEIRFITDQLRKDDECNDIANDWKFAAMVVDRLCLIIFTMFTILATIAVLL 800
            ||..:  :|...|:.:.||...|..||....:..||||.|||||||.|.:|.:..||.|:.:.|
Mouse   419 SSGRFRQDLQEALEGVSFIAQHLESDDRDQSVIEDWKFVAMVVDRLFLWVFVIVCILGTMGLFL 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 191/499 (38%)
Chrnb4NP_683746.1 LIC 21..483 CDD:273305 191/504 (38%)
Neur_chan_LBD 26..231 CDD:280998 89/208 (43%)
Neur_chan_memb 238..481 CDD:280999 98/280 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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