DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha5 and LOC101882637

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:XP_021324910.1 Gene:LOC101882637 / 101882637 -ID:- Length:540 Species:Danio rerio


Alignment Length:506 Identity:176/506 - (34%)
Similarity:284/506 - (56%) Gaps:24/506 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 VCLAGYHEKRLLHDLLDPYNTLERPVLNESDPLQLSFGLTLMQIIDVDEKNQLLVTNVWLKLEWN 370
            :|..|.:..:||.||...|.:..|||.:.::.:.::..:||.||||:||:||:|.|.:|::..|.
Zfish    43 LCAQGRYAFKLLKDLFVNYTSALRPVEDTNNIINVTLQITLSQIIDMDERNQILTTYLWIRQVWF 107

  Fly   371 DMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSADEGFDGTYQTNVVVRNNGSCLYVPPGIFKS 435
            |..|.|||:||.|:..:|||...:|:|||::||:||:.|..:.:||||:|::|..::..|.|.||
Zfish   108 DAYLTWNTTDYDGLDTIRIPSSYVWRPDVVLYNNADDQFSSSMETNVVIRHDGQIMWDQPAITKS 172

  Fly   436 TCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDETGGDISSYVLNGEWELLGVPGKRNEIYY 500
            :||:|:::||||.|.|.:.|||||::|.|:||....:: .|::.:|.|.|||:.|:|.|:|.|.|
Zfish   173 SCKVDVSFFPFDVQHCRLTFGSWTHNGNQMDLHNALDS-ADLADFVENVEWEVQGMPAKKNVILY 236

  Fly   501 NCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMALLGFTLPPDSGEKLSLGVTILLSLTVF 565
            .||.:||.|||:.:.::||..:|.|||:|||::|:.:|.|||.||.|||||:|||||:||:||||
Zfish   237 GCCSDPYPDITYTLHLKRRASFYIFNLLIPCMMISFLAPLGFYLPADSGEKVSLGVTVLLALTVF 301

  Fly   566 LNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNADTHEMSEWIRIVFLCWLP 630
            ..:|||:|| .|:.|||:|.|:...|.|:.:|...||.|:|.||...:...:..|.|...|.:|.
Zfish   302 QLLVAESMP-PSENVPLIGKYYIATMTMITASTALTIFIMNIHHCGPEAQPVPSWARRFILNYLA 365

  Fly   631 WILRMSRPGRPLILEFPTTP------CSDTSSERKHQILSDVELKERSSKSLLANVLDIDDDFRH 689
            ....:...|:..:......|      |:.....|.....  :.|.|..|:.       :.|.|..
Zfish   366 RFCFVYDMGQSCVSVHTDQPAKKGNNCTINGQARGEDFA--LRLHEGCSQK-------VKDQFNE 421

  Fly   690 NCRP-MTPGGTLPHNP-----AFYRTVYGQGDDGSIGPIGSTRMPDAVTHHTCIKSSTEYELGLI 748
            :..| ::|.....|..     .|....:|: ..|:.|..|::|..........::|........:
Zfish   422 DASPTLSPQQRKEHQSGWRIGTFVEIEHGE-SAGATGETGASRKESVKKREILVESQCLCHQQAL 485

  Fly   749 LKEIRFITDQLRKDDECNDIANDWKFAAMVVDRLCLIIFTMFTILATIAVL 799
            |:.:.:|.:..::.........:|:..|.|:||..:.||.:...|.::.::
Zfish   486 LRNVEYIANFYQEQKATQRRNAEWRKVAKVMDRFFMWIFFIMVFLMSLLII 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 174/499 (35%)
LOC101882637XP_021324910.1 Neur_chan_LBD 30..416 CDD:332142 154/383 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D363540at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.