DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and chrna8

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:XP_021329572.1 Gene:chrna8 / 100537531 ZFINID:ZDB-GENE-090313-161 Length:516 Species:Danio rerio


Alignment Length:530 Identity:247/530 - (46%)
Similarity:332/530 - (62%) Gaps:47/530 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   291 HSWIFLLIYLNLSAKVCLAGYHEKRLLHDLLDPYNTLERPVLNESDPLQLSFGLTLMQIIDVDEK 355
            |..||  |:.:...|..|.|.::::|..:|::.||.|||||||:|.|:.:..||||:||||||||
Zfish    12 HLGIF--IWTSFCIKGSLQGEYQRKLYKELMENYNRLERPVLNDSAPIVVELGLTLLQIIDVDEK 74

  Fly   356 NQLLVTNVWLKLEWNDMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSADEGFDGTYQTNVVVR 420
            ||:|:||.||:|.|.|:.|.||..:|.||:.||.|.::||.||:|:||||||.||.|:.|||:|.
Zfish    75 NQVLITNAWLQLGWTDVYLSWNPDNYPGVQTLRFPSNQIWTPDILLYNSADERFDATFHTNVLVN 139

  Fly   421 NNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDETGGDISSYVLNGE 485
            .:|:|.|:||||.||||.||:.|||||.|:|::||||||::|:.||||:|   ..|||:|:.|||
Zfish   140 ASGACQYIPPGILKSTCYIDVRWFPFDIQKCDLKFGSWTHNGWLLDLQMQ---AVDISTYIPNGE 201

  Fly   486 WELLGVPGKRNEIYYNCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMALLGFTLPPDSGE 550
            |:|:||||||||:||.||.|||.|:||.:.:|||||||..||:||||||:.:|||.|.||.||||
Zfish   202 WDLVGVPGKRNELYYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISGLALLVFLLPADSGE 266

  Fly   551 KLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNADTH 615
            |:|||:|:|||||||:.:|||.||||||:|||:..||...|.:|..|||.|:|:|.:||.:....
Zfish   267 KISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMMIVGLSVVVTVLVLQFHHHDPQGG 331

  Fly   616 EMSEWIRIVFLCWLPWILRMSRPGRPLILEFPTTPCSDTSSERKHQILSDVELKERSSKSLLANV 680
            :|..|:|::.|.|..|.|||.:||                .|||.....|......:|.|     
Zfish   332 KMPRWVRVILLNWCAWFLRMKKPG----------------EERKANFKYDQSPAHHASAS----- 375

  Fly   681 LDIDDDFRHNCRPMTPGGTLPHNPAFYRTVYG-----------QGDDG---SIGPIGSTRMPDAV 731
                 ..:....|..|..|...........:|           ..|.|   |.|.:|.:  |:..
Zfish   376 -----SIQMGVMPGQPSSTNSTTNGHMNLYFGYHSIDSACCPPSSDSGVSCSGGRVGGS--PNEE 433

  Fly   732 THHTCIKSSTEYELGLILKEIRFITDQLRKDDECNDIANDWKFAAMVVDRLCLIIFTMFTILATI 796
            ........:.|.|:..||.|:.:|..:.|..||...|.::|||||.|||||||:.|::|:|:.|.
Zfish   434 QREGVRMFAGEPEIHRILAEVMYIAQRFRDQDEAEAICSEWKFAAAVVDRLCLVAFSLFSIICTF 498

  Fly   797 AVLLSAPHII 806
            .:|:|||:.|
Zfish   499 TILMSAPNFI 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 236/502 (47%)
chrna8XP_021329572.1 Neur_chan_LBD 12..504 CDD:332142 243/524 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 288 1.000 Domainoid score I1532
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 510 1.000 Inparanoid score I1280
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D363540at33208
OrthoFinder 1 1.000 - - FOG0000891
OrthoInspector 1 1.000 - - mtm6506
orthoMCL 1 0.900 - - OOG6_104534
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X767
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.970

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