DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimC4 and Tnfaip6

DIOPT Version :9

Sequence 1:NP_609698.2 Gene:NimC4 / 34824 FlyBaseID:FBgn0260011 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_445834.1 Gene:Tnfaip6 / 84397 RGDID:621359 Length:275 Species:Rattus norvegicus


Alignment Length:112 Identity:27/112 - (24%)
Similarity:37/112 - (33%) Gaps:33/112 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 PVCRVGDGCANGKCIDVD-RCACNSGYRWDKAEERCIELSAESISEELETTEDNTDSPSTSSTAV 233
            |:.:.|..|..||...:| ....|...|||   ..|...:|:...                  .|
  Rat    95 PIVKPGPNCGFGKTGIIDYGIRLNRSERWD---AYCYNPNAKECG------------------GV 138

  Fly   234 FTATHCPDDFVLFRGECREKQFDSNDVGC-----LKSGCGPHQTCLD 275
            ||     |...:|:......::|.|.| |     ||.|...|.:.||
  Rat   139 FT-----DPKRIFKSPGFPNEYDDNQV-CYWHIRLKYGQRIHLSFLD 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC4NP_609698.2 None
Tnfaip6NP_445834.1 Link_domain_TSG_6_like 36..128 CDD:239592 10/35 (29%)
CUB 135..244 CDD:395345 15/69 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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