DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimC4 and stab1

DIOPT Version :9

Sequence 1:NP_609698.2 Gene:NimC4 / 34824 FlyBaseID:FBgn0260011 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_001182543.1 Gene:stab1 / 570626 ZFINID:ZDB-GENE-050208-554 Length:2553 Species:Danio rerio


Alignment Length:329 Identity:68/329 - (20%)
Similarity:108/329 - (32%) Gaps:80/329 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 NYCERNETIRAT-----------VPVTKQRIIVKQPSKWK--------IWKKTEKITE-IYDSEE 66
            |:|.::..::.|           .|.:.:....|.|...|        :.||.:.::. :.|...
Zfish  1247 NHCSKDVILKITGRCGDCKAAPQCPFSAKPTQPKFPQNMKSNCKYRTRVGKKRKTVSGCLMDCLR 1311

  Fly    67 EQVTHRLVRECCPGYLQVESGLCEPICSRGCPAHASCA----APDRCECISGYVSARNHQDGSHY 127
            ....|    .|||||...:.|.|.......|..:..|.    ...:|.|..|:     |......
Zfish  1312 TTKDH----SCCPGYFGHDCGKCPGTLDNWCSNNGQCEDGLHGTGKCLCNEGF-----HGTACEM 1367

  Fly   128 CEP-----ICETPCPA-GAQCVT----PNTCACRDGYTQLQPTDDGVSGGCAPVCRVGDGCANGK 182
            |||     .|::.|.. ..:|:.    ...|.|..|:..::.:...|...|..||.|...|.:|.
Zfish  1368 CEPGRYGKDCKSECHCEHGKCLDGLEGNGQCICFKGWKGVKCSVVVVDDACGGVCDVNANCISGD 1432

  Fly   183 CIDVDRCACNSGYRWDKAEERCIELSAESISEELETTEDN---------TDSPSTSSTAVFTATH 238
            ......|:|.:||:.:..       |.|.|:   ...|||         |.:.....|...|..:
Zfish  1433 SGTPPTCSCTAGYKGNGT-------SCEEIN---PCAEDNGGCSVNANCTKTAPGERTCTCTTNY 1487

  Fly   239 CPDDFVLFRGECREKQFDSNDVGCL--KSGCGPHQTCLDSG----VCQCSDGYVPEESGEATGVL 297
            ..|..:     |.|..      .||  ..||..:..|:.:|    .|.|..|:: .:......|.
Zfish  1488 IGDGVI-----CVEMD------ACLVNNGGCDENAICMKTGPNRVACACRPGFI-SQGHRCLAVN 1540

  Fly   298 SCRR 301
            .||:
Zfish  1541 PCRK 1544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC4NP_609698.2 None
stab1NP_001182543.1 EGF_3 227..257 CDD:289699
Fasciclin 379..475 CDD:295423
FAS1 455..630 CDD:225214
Fasciclin 504..630 CDD:280607
EGF_3 819..847 CDD:289699
EGF_3 859..889 CDD:289699
EGF_3 901..932 CDD:289699
EGF_3 938..974 CDD:289699
Fasciclin 1002..1103 CDD:280607
Fasciclin 1125..1242 CDD:295423
EGF_3 1458..1494 CDD:289699 7/40 (18%)
EGF_3 1500..1536 CDD:289699 9/36 (25%)
EGF_3 1542..1578 CDD:289699 2/3 (67%)
Fasciclin 1611..1711 CDD:280607
Fasciclin 1734..1864 CDD:280607
EGF_3 2085..2120 CDD:289699
EGF_3 2128..2163 CDD:289699
Link_domain_TSG_6_like 2198..2290 CDD:239592
Fasciclin 2322..2448 CDD:295423
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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