DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18095 and Cpn2

DIOPT Version :9

Sequence 1:NP_001188805.1 Gene:CG18095 / 34823 FlyBaseID:FBgn0028872 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_082180.2 Gene:Cpn2 / 71756 MGIID:1919006 Length:547 Species:Mus musculus


Alignment Length:534 Identity:133/534 - (24%)
Similarity:225/534 - (42%) Gaps:89/534 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 PHVENGFFVRFDHLLHLELQHSGLSDLDDFSLNG---LTKLQYLSLSHNNLSSLRSWSSEP---- 109
            ||:.:..||           .:..:.:...:.:|   |||:.:|:....:|        ||    
Mouse    49 PHITDIVFV-----------ETAFTTVRTRAFSGSPNLTKVVFLNTQVRHL--------EPDAFG 94

  Fly   110 -LGALTNLDLSHNMLSKLSVKSFEQYPQLQQLDLRYNRISQIENDSFDGLSHLKHLYLNGNQLAH 173
             |..|.:|:::.:.:|.||...|.....|::|.|.::|::.:..|.|..:..|:.|.|.||||..
Mouse    95 GLPRLQDLEITGSPVSNLSAHIFSNLSSLEKLTLDFDRLAGLPEDLFCHMDILESLQLQGNQLRT 159

  Fly   174 IDGSFFRGLHRLSSLSLQHNRIEFIEMDSFESNTHLRSLRLDQNLLSSLQFLSQRGLARLVHLNL 238
            :.|..|:.|..|.:|:|..|.:..:...:|:|.|.|:.|:|..|:|:.|...:...|:.|..|.|
Mouse   160 LPGRLFQSLRDLRTLNLAQNLLTQLPKGAFQSLTGLQMLKLSNNMLARLPEGALGSLSSLQELFL 224

  Fly   239 SSNLLQKLEPFVFSKNFELQDLDLSYNNITKLNKEALSGLDSLERLNISHNYVDKIYDESLDSLI 303
            ..|.:.:|.|.:||:.|.|:.|.|.:|.|..|.....|.|.:|..|::..|.:..:.:.......
Mouse   225 DGNAITELSPHLFSQLFSLEMLWLQHNAICHLPVSLFSSLHNLTFLSLKDNALRTLPEGLFAHNQ 289

  Fly   304 ALLQLDISFNLLTTLPDNLFHFNTQLEEIILANNKIEEISSQMMFNQNHLRYIKLSGNAISDAAF 368
            .||.|.:|:|.|.|:|:..|...::|..:.|::|.|.::...:..|...|  :|||.::.:..|.
Mouse   290 GLLHLSLSYNQLETIPEGAFTNLSRLVSLTLSHNAITDLPEHVFRNLEQL--VKLSLDSNNLTAL 352

  Fly   369 LDRLSPSVNRFTLYVDLSSNRLKSLNLSSLLHFRY--INLA--DNNWSCNWLVANLVQKLPNSVN 429
            ...|..:::|..| ::||.|:|.:|. ..:....|  .|||  .|.|.|:..::.|...|     
Mouse   353 HPALFHNLSRLQL-LNLSRNQLTTLP-GGIFDTNYDLFNLALLGNPWQCDCHLSYLTSWL----- 410

  Fly   430 FARPWTVINNLSENT-TNVEGIDCIEGGTNRSIILLDVSGVPQPKSDNCDCVVAYDETNPSPPPL 493
                 .:.||...|| |...|...::|..           ||..|.:...|.|       :|..|
Mouse   411 -----RLYNNQISNTHTFCAGPAYLKGQL-----------VPNLKQEQLICPV-------NPGHL 452

  Fly   494 TWPKIPTDRFDSRSVIIWML-------------------VAIAIAFSGLRWLRRFVDRNEKRKLG 539
            ::..:..|  :......|.|                   |.:|...|..|||...:...:    |
Mouse   453 SFRALGLD--EGEPAGSWDLTVEGRAAHSQCAYSNPEGTVLLACEESRCRWLNIQLSSRD----G 511

  Fly   540 QKMLHNVYVSKVQW 553
            ......||.|..:|
Mouse   512 SDSAAMVYNSSQEW 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18095NP_001188805.1 leucine-rich repeat 41..64 CDD:275380 4/11 (36%)
LRR_8 64..123 CDD:290566 11/66 (17%)
leucine-rich repeat 65..88 CDD:275380 2/25 (8%)
leucine-rich repeat 89..112 CDD:275380 5/27 (19%)
leucine-rich repeat 113..136 CDD:275380 6/22 (27%)
LRR_RI 115..384 CDD:238064 77/268 (29%)
LRR_8 135..195 CDD:290566 20/59 (34%)
leucine-rich repeat 137..160 CDD:275380 6/22 (27%)
leucine-rich repeat 161..184 CDD:275380 10/22 (45%)
LRR_8 184..243 CDD:290566 18/58 (31%)
leucine-rich repeat 185..208 CDD:275380 6/22 (27%)
leucine-rich repeat 209..232 CDD:275380 7/22 (32%)
LRR_8 232..289 CDD:290566 19/56 (34%)
leucine-rich repeat 233..256 CDD:275380 8/22 (36%)
leucine-rich repeat 257..280 CDD:275380 8/22 (36%)
LRR_8 280..339 CDD:290566 15/58 (26%)
leucine-rich repeat 281..304 CDD:275380 3/22 (14%)
leucine-rich repeat 305..328 CDD:275380 9/22 (41%)
Cpn2NP_082180.2 LRRNT 21..52 CDD:214470 2/2 (100%)
LRR_8 73..133 CDD:290566 17/67 (25%)
leucine-rich repeat 75..98 CDD:275380 8/30 (27%)
LRR 1 98..119 6/20 (30%)
leucine-rich repeat 99..122 CDD:275380 6/22 (27%)
LRR_8 121..181 CDD:290566 20/59 (34%)
LRR 2 122..143 6/20 (30%)
leucine-rich repeat 123..146 CDD:275380 6/22 (27%)
LRR 3 146..167 9/20 (45%)
leucine-rich repeat 147..170 CDD:275380 10/22 (45%)
LRR_RI 149..374 CDD:238064 68/227 (30%)
LRR 4 170..191 5/20 (25%)
LRR_8 171..229 CDD:290566 18/57 (32%)
leucine-rich repeat 171..194 CDD:275380 6/22 (27%)
LRR 5 194..215 6/20 (30%)
leucine-rich repeat 195..218 CDD:275380 7/22 (32%)
LRR_8 217..277 CDD:290566 20/59 (34%)
LRR 6 218..239 7/20 (35%)
leucine-rich repeat 219..242 CDD:275380 8/22 (36%)
LRR 7 242..263 6/20 (30%)
leucine-rich repeat 243..266 CDD:275380 8/22 (36%)
LRR_8 266..325 CDD:290566 15/58 (26%)
LRR 8 266..287 3/20 (15%)
leucine-rich repeat 267..290 CDD:275380 3/22 (14%)
LRR 9 290..311 9/20 (45%)
leucine-rich repeat 291..314 CDD:275380 9/22 (41%)
LRR_8 313..373 CDD:290566 16/62 (26%)
LRR 10 314..335 4/20 (20%)
leucine-rich repeat 315..338 CDD:275380 5/22 (23%)
LRR 11 338..359 6/22 (27%)
leucine-rich repeat 339..360 CDD:275380 6/22 (27%)
LRR 12 362..383 7/22 (32%)
leucine-rich repeat 363..382 CDD:275380 6/20 (30%)
LRRCT 395..436 CDD:214507 12/61 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831222
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.