DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18095 and CG18249

DIOPT Version :9

Sequence 1:NP_001188805.1 Gene:CG18095 / 34823 FlyBaseID:FBgn0028872 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001163549.1 Gene:CG18249 / 40964 FlyBaseID:FBgn0037553 Length:559 Species:Drosophila melanogaster


Alignment Length:567 Identity:140/567 - (24%)
Similarity:232/567 - (40%) Gaps:118/567 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 FSFSPRLSC--LQLSKCNNTEVT--LIRKTELLTSLTLSNCTLPHVENGFFVRFDHLLHLELQHS 73
            :|.:|.|..  |.|..|:...:|  :::.|..|.:|.:.||...|:........::|..|::|.:
  Fly    49 YSATPALQLRELHLRNCSRQSITWLVLQLTPGLRTLVIRNCATYHISKESLRPVENLTSLQMQGT 113

  Fly    74 GLSDLDDFSLNGLTKLQYLSLSHNNLSSLRSWSSEPLGALTNLDLSHNMLSKLSVKSFEQYPQLQ 138
            .|..|.|...|.:.:|:.|.||.|.:.::...:.:.|..|..|.|..|.::::...:.:...:|.
  Fly   114 SLGVLRDQIFNAVPRLEILQLSQNFIHTVHVAAFQGLSKLRLLGLQGNAIAEILSSTLDPLMELV 178

  Fly   139 QLDLRYNRISQIENDSFDGLSHLKHLYLNGNQLAHIDGSFFRGLHRLSSLSLQHNRIEFIEMDSF 203
            .|||..|.::.:..:.|.....|:.|.||||.|..:.......|..|..|.|.|    ..|::..
  Fly   179 HLDLSRNELTTLPQNIFAKNKKLQTLLLNGNPLRILMPDVLGSLPNLRLLDLGH----AAELEVM 239

  Fly   204 ESN-THLRSLRLDQNLLSSLQFLSQRGLARLVHLNLSSNLLQKLEPFVFSKNFELQDLDLSYNNI 267
            ..| |::::|.|:.:.||||  :...|..:|...|...|.||     |.:|: .:.::|| :.|:
  Fly   240 TLNLTNVQNLVLEGSSLSSL--VINGGFIKLQAGNNELNHLQ-----VGNKS-SVIEMDL-HGNL 295

  Fly   268 TKLNKEA--LSGLDSLERLNISHNYVDKI--YDESLDSLIALLQLDISFNLLTTLPDNLFHFNTQ 328
            ...|..|  |.|:.:|:||::|.|.::.:  :...||:        .....|..||        .
  Fly   296 LNGNDTAALLRGMWNLQRLDLSKNRIEALPQHGSGLDA--------SGTQELLILP--------S 344

  Fly   329 LEEIILANNKIEEISSQMMFNQNHLRYIKLSGNAI--SDAAFLDRLSPSVNRFTLYVDLSSNRLK 391
            |:.:.||||::..:..:.....:.|.|:.||.|.:  .|.|.|..||....   |||:  .|||.
  Fly   345 LKFLNLANNQLVRLPPESPILSSRLSYLDLSHNLMLTLDVAILRSLSVLKG---LYVE--GNRLN 404

  Fly   392 SLNLSSLLHFRY-----INLADNNWSCNWLVANLVQKL-----PNSVNF-ARPWTVINNLSENTT 445
            ::|... ||..:     :.|.||.||     :.|.:|:     ...|:. |||...:.|.|..  
  Fly   405 TINYQK-LHEEHPDLSELGLHDNPWS-----SGLYRKMFLYFTDRGVHLQARPQNRVLNKSSR-- 461

  Fly   446 NVEGIDCIEGGTNRSIILLDVSGVP---QPKSDNCDCVVAYDETNPSPPPLT-----WPKIPTDR 502
                              :|:...|   |.::...|           ||.:|     |       
  Fly   462 ------------------VDIDWPPNEGQAEAQKMD-----------PPGVTGIHPYW------- 490

  Fly   503 FDSRSVI--IWMLVAIAIAFSGL-------RWLRRFVDRNEKRKLGQ 540
             ..|.::  :.:||.:.|....|       ..||||......|.|||
  Fly   491 -TLRDILAFVTLLVVMIILLMNLYHILEEEGCLRRFRHWRRSRTLGQ 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18095NP_001188805.1 leucine-rich repeat 41..64 CDD:275380 5/22 (23%)
LRR_8 64..123 CDD:290566 17/58 (29%)
leucine-rich repeat 65..88 CDD:275380 7/22 (32%)
leucine-rich repeat 89..112 CDD:275380 6/22 (27%)
leucine-rich repeat 113..136 CDD:275380 4/22 (18%)
LRR_RI 115..384 CDD:238064 72/275 (26%)
LRR_8 135..195 CDD:290566 18/59 (31%)
leucine-rich repeat 137..160 CDD:275380 6/22 (27%)
leucine-rich repeat 161..184 CDD:275380 8/22 (36%)
LRR_8 184..243 CDD:290566 17/59 (29%)
leucine-rich repeat 185..208 CDD:275380 6/23 (26%)
leucine-rich repeat 209..232 CDD:275380 7/22 (32%)
LRR_8 232..289 CDD:290566 18/58 (31%)
leucine-rich repeat 233..256 CDD:275380 7/22 (32%)
leucine-rich repeat 257..280 CDD:275380 7/24 (29%)
LRR_8 280..339 CDD:290566 15/60 (25%)
leucine-rich repeat 281..304 CDD:275380 7/24 (29%)
leucine-rich repeat 305..328 CDD:275380 3/22 (14%)
CG18249NP_001163549.1 leucine-rich repeat 57..80 CDD:275380 5/22 (23%)
LRR_8 104..163 CDD:290566 17/58 (29%)
leucine-rich repeat 105..128 CDD:275380 7/22 (32%)
LRR_RI 107..438 CDD:238064 99/370 (27%)
leucine-rich repeat 129..152 CDD:275380 6/22 (27%)
leucine-rich repeat 153..176 CDD:275380 4/22 (18%)
LRR_8 176..232 CDD:290566 17/55 (31%)
leucine-rich repeat 177..200 CDD:275380 6/22 (27%)
leucine-rich repeat 201..224 CDD:275380 8/22 (36%)
leucine-rich repeat 225..258 CDD:275380 10/36 (28%)
leucine-rich repeat 259..310 CDD:275380 16/59 (27%)
leucine-rich repeat 311..344 CDD:275380 10/48 (21%)
LRR_8 343..403 CDD:290566 20/72 (28%)
leucine-rich repeat 345..368 CDD:275380 5/22 (23%)
leucine-rich repeat 369..390 CDD:275380 8/20 (40%)
leucine-rich repeat 393..417 CDD:275380 9/29 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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