DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18095 and atk

DIOPT Version :9

Sequence 1:NP_001188805.1 Gene:CG18095 / 34823 FlyBaseID:FBgn0028872 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001262113.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster


Alignment Length:523 Identity:141/523 - (26%)
Similarity:246/523 - (47%) Gaps:79/523 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PRLSCLQLSKCNNTEV--TLIRKTELLTSLTLSNCTLPHVENGFFVRFDHLLHLELQHSGLSDLD 79
            |.|..|.||:....|:  ...|...||.:|.:|:..|..:.:...:..:.|..::..::.|..: 
  Fly   454 PSLRRLDLSENGLIELAPNSFRHNPLLETLNISSNELTKIHSSTLIHLERLFEVDASYNQLKSV- 517

  Fly    80 DFSLNGLTKL-QYLSLSHNNLSSLRSWSSEPLGA--LTNLDLSHNMLSKLSVKSFEQYPQLQQLD 141
               :.||.:: :.:||..|.::||.:.:|:.|..  |..||||.|.:.:|....|:...:|:.|.
  Fly   518 ---IAGLPRIVERISLKGNQITSLPAAASKDLQLPNLRMLDLSQNRIEQLPRHGFQGAMELRVLS 579

  Fly   142 LRYNRISQIENDSFDGLSHLKHLYLNGNQLAHIDGSFFRGLHRLSSLSLQHNRIEFIEMDSFESN 206
            |..|.:.|:::.||.|:..|:.|:|..|||...|......|..|.:|:||.|::|.|..:.|.:|
  Fly   580 LAQNELRQLKDTSFIGIQRLELLHLQENQLGEADERALLPLAELRNLNLQSNKLEAITDNFFSNN 644

  Fly   207 THLRSLRLDQNLLSSLQ---FLSQRGLARLVHLNLSSNLLQKLEPFVFSKNFELQDLDLSYNNIT 268
            :.|..|.|.:||:.|:.   |.:||.|.   :|:||.|.|..:...:.:.| .|:|:|||||.|:
  Fly   645 SRLEQLDLSRNLIRSISPTAFDTQRSLE---YLDLSGNALLDISVGLGNLN-NLRDIDLSYNQIS 705

  Fly   269 KLNKEALSGLDSLERLNISHNYVDKIYDESLDSLIALLQLDISFNLLTTLPDNLFHFNTQLEEII 333
            ::..:.:.|..::..:.:|:|.:.::...:..:|..|..||:|.|.:..:.........:|:|.:
  Fly   706 RIQSDVIGGWRNVVEIRLSNNLIVELQQGTFRNLPKLQYLDLSSNEIRNVEPGALKGLDELQEFV 770

  Fly   334 LANNKIEEISSQMM----------FNQNHLRYIKLSGNAISDAAFLDRLSPSVNRFTLYVDLSSN 388
            ||:||:.|:...:.          |..|.||||  |..:..:|..|..|:.|.|.|        .
  Fly   771 LADNKLVELKDHVFEELPSLLASHFQYNKLRYI--SPESFHNANSLVFLNLSNNHF--------R 825

  Fly   389 RLKSLNLSSLLHFRYINLADNN---------WSCNWLVA-----NLVQKLPNS----VNFARPWT 435
            .::::.|.|:.:...::|:.|.         .:.||||.     |.:.::..|    :...|..:
  Fly   826 NMENIGLRSMRNLEVLDLSTNGVKLVSTMPLKALNWLVELKMDNNQICRIQGSPFETMPRLRVLS 890

  Fly   436 VINN----LSENT-TNVEGIDCIEGGTNRSIILLDVSGVPQPKSDNCDCVVAY-----DETN-PS 489
            :.||    :.|.| .||.|          :|.:|||.|.|    .:|:|.:.:     .||| |.
  Fly   891 MRNNQLRSIKERTFRNVRG----------NIAILDVDGNP----IDCNCEMQWLSVWLQETNFPY 941

  Fly   490 PPP 492
            |.|
  Fly   942 PGP 944

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG18095NP_001188805.1 leucine-rich repeat 41..64 CDD:275380 4/22 (18%)
LRR_8 64..123 CDD:290566 17/61 (28%)
leucine-rich repeat 65..88 CDD:275380 4/22 (18%)
leucine-rich repeat 89..112 CDD:275380 7/23 (30%)
leucine-rich repeat 113..136 CDD:275380 8/22 (36%)
LRR_RI 115..384 CDD:238064 85/281 (30%)
LRR_8 135..195 CDD:290566 21/59 (36%)
leucine-rich repeat 137..160 CDD:275380 8/22 (36%)
leucine-rich repeat 161..184 CDD:275380 8/22 (36%)
LRR_8 184..243 CDD:290566 23/61 (38%)
leucine-rich repeat 185..208 CDD:275380 9/22 (41%)
leucine-rich repeat 209..232 CDD:275380 10/25 (40%)
LRR_8 232..289 CDD:290566 16/56 (29%)
leucine-rich repeat 233..256 CDD:275380 6/22 (27%)
leucine-rich repeat 257..280 CDD:275380 9/22 (41%)
LRR_8 280..339 CDD:290566 13/58 (22%)
leucine-rich repeat 281..304 CDD:275380 3/22 (14%)
leucine-rich repeat 305..328 CDD:275380 5/22 (23%)
atkNP_001262113.1 leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
LRR_8 183..244 CDD:290566
leucine-rich repeat 185..209 CDD:275380
LRR_4 209..247 CDD:289563
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..259 CDD:275380
LRR_RI 250..492 CDD:238064 12/37 (32%)
LRR_8 259..318 CDD:290566
leucine-rich repeat 260..283 CDD:275380
leucine-rich repeat 284..307 CDD:275380
leucine-rich repeat 308..359 CDD:275380
leucine-rich repeat 334..348 CDD:275378
LRR_8 358..418 CDD:290566
leucine-rich repeat 360..383 CDD:275380
leucine-rich repeat 384..407 CDD:275380
LRR_8 406..466 CDD:290566 5/11 (45%)
leucine-rich repeat 408..431 CDD:275380