DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18095 and Cpn2

DIOPT Version :9

Sequence 1:NP_001188805.1 Gene:CG18095 / 34823 FlyBaseID:FBgn0028872 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001100555.1 Gene:Cpn2 / 303861 RGDID:1305170 Length:565 Species:Rattus norvegicus


Alignment Length:502 Identity:134/502 - (26%)
Similarity:213/502 - (42%) Gaps:64/502 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 LTKLQYLSLSHNNLSSLRSWSSEPLGALTNLDLSHNMLSKLSVKSFEQYPQLQQLDLRYNRISQI 150
            :|.:.::..|...:.: |::|..|  .||.:...:..:..|...:|...|:|:.|::..:..|.:
  Rat    74 VTDIVFVETSFTTVGT-RAFSGSP--NLTKVVFLNTRVHHLEPDAFGGLPRLEDLEVTGSPFSNL 135

  Fly   151 ENDSFDGLSHLKHLYLNGNQLAHIDGSFFRGLHRLSSLSLQHNRIEFIEMDSFESNTHLRSLRLD 215
            ..:.|..||.|..|.|:.|:||.:....|..:..|.||.||.|:::.:....|:|..:||:|.|.
  Rat   136 SANIFSNLSSLGKLTLDFNRLAALPEDLFHHMDTLESLQLQGNQLQTLPGRLFQSLRYLRTLNLA 200

  Fly   216 QNLLSSLQFLSQRGLARLVHLNLSSNLLQKLEPFVFSKNFELQDLDLSYNNITKLNKEALSGLDS 280
            ||||:.|.....:.|:.|..|.||.|:..:|...|.|....||:|.|..|.||:|:....|.|.|
  Rat   201 QNLLTQLPKGMFQSLSSLQILKLSDNMFARLPEGVLSNLGSLQELFLDSNAITELSPHLFSHLLS 265

  Fly   281 LERLNISHNYVDKIYDESLDSLIALLQLDISFNLLTTLPDNLFHFNTQLEEIILANNKIEEISSQ 345
            ||:|.:.||.:..:...:..||..|..|::..|.|.|||..||..|..|..:.|:.|::|.:...
  Rat   266 LEKLWLQHNAISHLPVSAFSSLRNLTFLNLKDNALRTLPAGLFTHNPGLLHLSLSYNQLETVPEG 330

  Fly   346 MMFNQNHLRYIKLSGNAIS---DAAF-----LDRLSPSVNRF-----TLYVDLSSNRLKSLNLSS 397
            ...|...|..:.||.|||:   :..|     |.:||...|..     ||:.:||..:|..|:.:.
  Rat   331 SFANLRKLASLTLSHNAITHLPENVFRNLEQLVKLSLDSNNLTVLHPTLFHNLSKLQLLDLSRNQ 395

  Fly   398 L---------LHFRYINLA--DNNWSCNWLVANLVQKLPNSVNFARPWTVINNLSENT-TNVEGI 450
            |         .::...|||  .|.|.|:..::.|...|          .:.|:...|| |...|.
  Rat   396 LTMLPGGIFDTNYDLFNLALLGNPWQCDCRLSYLTSWL----------RLYNDRIFNTHTFCAGP 450

  Fly   451 DCIEGGTNRSIILLDVSGVPQPKSDNCDC-----VVAYDETNPSPPPLTWPKIPTDRFDSRSVII 510
            ..::|..           ||..|.:...|     .:..|:..|:.   :|......|...|..|.
  Rat   451 AYLKGQL-----------VPNLKQEQLVCPGNPGQLGLDDREPAG---SWDLAVEGRAAHRQCIY 501

  Fly   511 WM---LVAIAIAFSGLRWLRRFVDRNEKRKLGQKMLHNVYVSKVQWQ 554
            ..   .|.:|...:..|||...:...|    |..:....|.|..:|:
  Rat   502 GNPEGTVLLACEEAQCRWLNIQLSSRE----GSDVTAMAYNSSQEWE 544

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG18095NP_001188805.1 leucine-rich repeat 41..64 CDD:275380
LRR_8 64..123 CDD:290566 7/36 (19%)
leucine-rich repeat 65..88 CDD:275380 0/1 (0%)
leucine-rich repeat 89..112 CDD:275380 4/22 (18%)
leucine-rich repeat 113..136 CDD:275380 4/22 (18%)
LRR_RI 115..384 CDD:238064 88/281 (31%)
LRR_8 135..195 CDD:290566 20/59 (34%)
leucine-rich repeat 137..160 CDD:275380 5/22 (23%)
leucine-rich repeat 161..184 CDD:275380 7/22 (32%)
LRR_8 184..243 CDD:290566 23/58 (40%)
leucine-rich repeat 185..208 CDD:275380 8/22 (36%)
leucine-rich repeat 209..232 CDD:275380 10/22 (45%)
LRR_8 232..289 CDD:290566 22/56 (39%)
leucine-rich repeat 233..256 CDD:275380 8/22 (36%)
leucine-rich repeat 257..280 CDD:275380 10/22 (45%)
LRR_8 280..339 CDD:290566 21/58 (36%)
leucine-rich repeat 281..304 CDD:275380 7/22 (32%)
leucine-rich repeat 305..328 CDD:275380 10/22 (45%)