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Protein Alignment CG18095 and Dcn

DIOPT Version :9

Sequence 1:	NP_001188805.1	Gene:	CG18095 / 34823	FlyBaseID:	FBgn0028872	Length:	564	Species:	Drosophila melanogaster
Sequence 2:	NP_077043.1	Gene:	Dcn / 29139	RGDID:	61895	Length:	354	Species:	Rattus norvegicus

Alignment Length:	287	Identity:	80/287 - (27%)
Similarity:	131/287 - (45%)	Gaps:	29/287 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly   135 PQLQQLDLRYNRISQIENDSFDGLSHLKHLYLNGNQLAHIDGSFFRGLHRLSSLSLQHNRIEFIE 199
            |....|||:.|:|::|:..:|..|..|..|.|..|:::.|....|:.|.:|..|.|..|.::  |
  Rat    76 PDTTLLDLQNNKITEIKEGAFKNLKDLHTLILVNNKISKISPEAFKPLVKLERLYLSKNHLK--E 138

  Fly   200 MDSFESNTHLRSLRLDQNLLSSLQFLSQRGLARLVHLNLSSNLLQK--LEPFVFSKNFELQDL-D 261
            :......| |:.|||..|.::.|:.....||.|::.:.|..|.|:.  :|      |..||.: .
  Rat   139 LPEKLPKT-LQELRLHDNEITKLKKSVFNGLNRMIVIELGGNPLKNSGIE------NGALQGMKG 196

  Fly   262 LSYNNITKLNKEAL-SGL-DSLERLNISHNYVDKIYDESLDSLIALLQLDISFNLLTTLPDNLFH 324
            |.|..|:..|..|: .|| .|:..|::..|.:.|:...||..:..|.:|.:|||.:|.:.:....
  Rat   197 LGYIRISDTNITAIPQGLPTSISELHLDGNKIAKVDAASLKGMSNLSKLGLSFNSITVVENGSLA 261

  Fly   325 FNTQLEEIILANNKIEEISSQMMFNQNHLRYIKLSGNAISDAAFLDRLSPSV-NRFTLY--VDLS 386
            ....|.|:.|.|||:..:.:.:. ...:::.:.|..|.||:....|...||. .|.|.|  |.|.
  Rat   262 NVPHLRELHLDNNKLLRVPAGLA-QHKYVQVVYLHNNNISEVGQHDFCLPSYQTRKTSYTAVSLY 325

  Fly   387 SNRLKSLNLSSLLHFRYINLADNNWSC 413
            ||.:           ||..:..:.:.|
  Rat   326 SNPV-----------RYWQIHPHTFRC 341

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.