DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18095 and Podnl1

DIOPT Version :9

Sequence 1:NP_001188805.1 Gene:CG18095 / 34823 FlyBaseID:FBgn0028872 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001013402.2 Gene:Podnl1 / 244550 MGIID:2685352 Length:559 Species:Mus musculus


Alignment Length:433 Identity:120/433 - (27%)
Similarity:193/433 - (44%) Gaps:69/433 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LIFSFSPRLSCLQL--SKCNNTEV--TLIRKTELLTSLTLSN-------CTLP------HVENGF 58
            |.|...|.|..:.|  ::..||.:  .....:|::|:|:||:       .:||      |::|..
Mouse   156 LTFGEKPALRSVYLHNNRLRNTGLPPNTFHGSEVITTLSLSSNQLSYLPPSLPASLERLHLQNNL 220

  Fly    59 FVRF--------DHLLHLELQHSGLSD--LDDFSLNGLTKLQYLSLSHNNLSSLRSWSSEPL-GA 112
            ..:.        .||..|.|||:.|:|  ||..:.:.|:.|:||.||||.|:::    .|.| |.
Mouse   221 ISKVPRGALSLQTHLRELYLQHNQLTDSGLDATTFSKLSSLEYLDLSHNQLATV----PEGLPGT 281

  Fly   113 LTNLDLSHNMLSKLSVKSFEQYPQLQQLDLRYNRI--SQIENDSFDGLSHLKHLYLNGNQLAHID 175
            ||.|.|..|.:..:......:...|:.|.|::|::  |.:...:...|..|..|:|.||:|..:.
Mouse   282 LTILHLGRNCIRHVEAVRLHKARGLRYLLLQHNKLGASALPKGTLRPLRALHTLHLYGNKLERVP 346

  Fly   176 GSFFRGLHRLSSLSLQHNRIEFIEMDSFESNTHLRSLRLDQNLLSSLQF--LSQRGLARLVHLNL 238
            .:..|   .|.:|.:.||.:..:......|...|..|.|..|.|:|...  .:.|.|..|..|:|
Mouse   347 PALPR---HLQALVMPHNHVAALGARDLVSARALAELNLAYNSLASAHVHPSAFRRLRALRSLDL 408

  Fly   239 SSNLLQKLEPFVFSKNFELQDLDLSYNNITKLNKEALSGLDSLERLNISHN--YVDKIYDESLDS 301
            :.|.|.:|...:.:   .|:.|.|..|.:..|..|.|:||:.|..||::||  .|..|...:...
Mouse   409 AGNQLTRLPEGLPA---SLRSLRLQRNQLRTLEPEQLAGLNKLRELNLAHNRLRVGDIGPGTWHE 470

  Fly   302 LIALLQLDISFNLLTTLPDNLFHFNTQLEEIILANNKIEEISSQMMFNQNHLRYIKLSGNAISDA 366
            |.||..||:|.|.|:.:|.:|   ...|||:.|..|:|..:..:...:..|||.:.|..|.:   
Mouse   471 LQALKVLDLSHNELSFVPPDL---PEALEELYLQANRISHVGPEAFLSTPHLRALFLRANRL--- 529

  Fly   367 AFLDRLSPSVNRFTLYVDLSSNRLKSLNLSSLLHFRYINLADN 409
                             .::|.|.::  |..|.|.|.::.|:|
Mouse   530 -----------------HMTSIRAEA--LQGLTHLRVVDTAEN 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18095NP_001188805.1 leucine-rich repeat 41..64 CDD:275380 8/43 (19%)
LRR_8 64..123 CDD:290566 27/61 (44%)
leucine-rich repeat 65..88 CDD:275380 10/24 (42%)
leucine-rich repeat 89..112 CDD:275380 10/23 (43%)
leucine-rich repeat 113..136 CDD:275380 5/22 (23%)
LRR_RI 115..384 CDD:238064 72/274 (26%)
LRR_8 135..195 CDD:290566 17/61 (28%)
leucine-rich repeat 137..160 CDD:275380 6/24 (25%)
leucine-rich repeat 161..184 CDD:275380 7/22 (32%)
LRR_8 184..243 CDD:290566 17/60 (28%)
leucine-rich repeat 185..208 CDD:275380 5/22 (23%)
leucine-rich repeat 209..232 CDD:275380 8/24 (33%)
LRR_8 232..289 CDD:290566 18/56 (32%)
leucine-rich repeat 233..256 CDD:275380 6/22 (27%)
leucine-rich repeat 257..280 CDD:275380 9/22 (41%)
LRR_8 280..339 CDD:290566 22/60 (37%)
leucine-rich repeat 281..304 CDD:275380 8/24 (33%)
leucine-rich repeat 305..328 CDD:275380 8/22 (36%)
Podnl1NP_001013402.2 leucine-rich repeat 50..68 CDD:275380
LRR 1. /evidence=ECO:0000255 66..89
leucine-rich repeat 69..92 CDD:275380
LRR_8 70..129 CDD:290566
LRR 2. /evidence=ECO:0000255 90..115
leucine-rich repeat 93..118 CDD:275380
LRR 3. /evidence=ECO:0000255 117..139
leucine-rich repeat 119..163 CDD:275380 2/6 (33%)
LRR_8 138..200 CDD:290566 12/43 (28%)
LRR 4. /evidence=ECO:0000255 140..160 2/3 (67%)
LRR_RI 161..345 CDD:238064 53/187 (28%)
LRR 5. /evidence=ECO:0000255 161..186 5/24 (21%)
leucine-rich repeat 164..189 CDD:275380 4/24 (17%)
LRR 6. /evidence=ECO:0000255 188..208 5/19 (26%)
leucine-rich repeat 190..210 CDD:275380 6/19 (32%)
LRR 7. /evidence=ECO:0000255 209..231 2/21 (10%)
LRR_8 210..271 CDD:290566 20/60 (33%)
leucine-rich repeat 211..234 CDD:275380 2/22 (9%)
LRR 8. /evidence=ECO:0000255 233..257 10/23 (43%)
leucine-rich repeat 235..260 CDD:275380 10/24 (42%)
LRR 9. /evidence=ECO:0000255 258..281 11/26 (42%)
leucine-rich repeat 261..305 CDD:275380 16/47 (34%)
LRR 10. /evidence=ECO:0000255 283..302 4/18 (22%)
LRR_RI 292..553 CDD:238064 76/291 (26%)
LRR 11. /evidence=ECO:0000255 303..328 5/24 (21%)
leucine-rich repeat 306..331 CDD:275380 6/24 (25%)
LRR 12. /evidence=ECO:0000255 329..352 8/25 (32%)
leucine-rich repeat 332..402 CDD:275380 20/72 (28%)
LRR_8 351..413 CDD:290566 18/64 (28%)
LRR 13. /evidence=ECO:0000255 354..373 3/18 (17%)
LRR 14. /evidence=ECO:0000255 374..399 6/24 (25%)
LRR 15. /evidence=ECO:0000255 400..423 7/25 (28%)
leucine-rich repeat 403..423 CDD:275380 6/22 (27%)
LRR_8 423..484 CDD:290566 23/60 (38%)
leucine-rich repeat 424..447 CDD:275380 9/22 (41%)
LRR 16. /evidence=ECO:0000255 425..444 6/18 (33%)
LRR 17. /evidence=ECO:0000255 445..470 8/24 (33%)
leucine-rich repeat 448..473 CDD:275380 8/24 (33%)
LRR 18. /evidence=ECO:0000255 471..494 10/25 (40%)
LRR_8 474..529 CDD:290566 19/57 (33%)
leucine-rich repeat 474..494 CDD:275380 8/22 (36%)
leucine-rich repeat 495..513 CDD:275380 6/17 (35%)
LRR 19. /evidence=ECO:0000255 496..515 5/18 (28%)
LRR 20. /evidence=ECO:0000255 517..541 8/45 (18%)
leucine-rich repeat 519..544 CDD:275380 8/46 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45712
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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