DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18095 and lrrtm1

DIOPT Version :9

Sequence 1:NP_001188805.1 Gene:CG18095 / 34823 FlyBaseID:FBgn0028872 Length:564 Species:Drosophila melanogaster
Sequence 2:XP_002935525.1 Gene:lrrtm1 / 100493874 XenbaseID:XB-GENE-966481 Length:521 Species:Xenopus tropicalis


Alignment Length:561 Identity:142/561 - (25%)
Similarity:234/561 - (41%) Gaps:128/561 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LQLSKCNNTEVTLIRKTELLTSLTLSNCTLPHVENGFFVRFDHLLHLELQHSGLSDLDDFSLNGL 86
            |.:..|.|   .|:||.   ..|.|  |||     |.||:.     |.|.:||...|  ....| 
 Frog     4 LLIGLCLN---WLLRKP---PGLIL--CTL-----GVFVKM-----LPLVNSGCPRL--CRCEG- 47

  Fly    87 TKLQYLSLSHNNLSSLRSWSSEPLGALTNLDLSHNMLSKLSVKSFEQYPQLQQLDLRYNRISQIE 151
               ::|.....|::                ::.||:...:.            |.||||.:|:::
 Frog    48 ---RFLYCESQNVT----------------EIPHNLSGVMG------------LSLRYNSLSELQ 81

  Fly   152 NDSFDGLSHLKHLYLNGNQLAHIDGSFFRGLHRLSSLSLQHNRIEFIEMDSFESNTHLRSLRLDQ 216
            :..|.||..|..|||:.|.:..::|:.|..|.|:..|:|..|:|..:...:|....:|||:.|..
 Frog    82 DGQFTGLIQLTWLYLDHNHIHTVEGNAFHKLRRVKELTLSSNKITHLANTTFRPMPNLRSVDLSN 146

  Fly   217 NLLSSLQFLSQRGLARLVHLNLSSNLLQKLEPFVFSKNFELQDLDLSYNNITKLNKEALSGLDSL 281
            |.|.||:.....||.:|..|::..|.::.:...:|.....|:.|||.||.:..|.:.:.:||..|
 Frog   147 NNLQSLEADLFHGLRKLTTLHMRYNAIKFVPVRIFQDCRSLKFLDLGYNQLKSLARNSFAGLFKL 211

  Fly   282 ERLNISHNYVDKIYDESLDSLIALLQLDISFNLLTTLPDNLFHFNTQLEEIILANNKIEEISSQM 346
            ..|::.||.:.|:.......|::|..|.:..|.:|.:.::| .|..:||::.|:.|:||.|...:
 Frog   212 TELHLEHNDLVKVNLAHFPRLLSLHSLFMRRNKVTIVVNSL-DFVWKLEKMDLSGNEIEYIEPHV 275

  Fly   347 MFNQNHLRYIKLSGNAISDAAFLDRLSPSVNRFTLYVD-LSSNRLKSLNLSSLLHFRYINLADNN 410
            ..:..||..::|..|.::                 ||| ...|..|||:        .|.||.||
 Frog   276 FESLPHLESLQLDSNRLT-----------------YVDPRILNSWKSLS--------SITLAGNN 315

  Fly   411 WSC--------NWLVA-------NLVQKLP---------NSVNFAR-------PWTVINNLSENT 444
            |.|        :||.|       |::...|         ::|.|.|       | |..|.:|...
 Frog   316 WDCGRNVCALASWLSAFKGRCDGNMLCTTPEYAQGEDVLDAVYFFRLCDDPVDP-TSANAISTAL 379

  Fly   445 TNVEGIDCIEGGTNRSIILLDVSGVPQPKSDNCDCVVAYDETNPSPPPLTWPKIPTDRFDSRSVI 509
            .|.:.| .|:..|..|..:.|..|   .::.|.......:|.:.:...:  .|:.|   .:.::|
 Frog   380 NNSDRI-AIDSPTATSYNVQDTEG---ERTTNVQTATVANEHHENTVQI--HKVVT---GTMALI 435

  Fly   510 IWMLVAIAIAF-------SGLRWLRR-FVDRNEKRKLGQKM 542
            ...|:.:.:.:       :.||.||: ||.:..|:|..|.|
 Frog   436 FSFLIVVLMLYVSWKCFPASLRQLRQCFVTQRRKQKQKQTM 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18095NP_001188805.1 leucine-rich repeat 41..64 CDD:275380 8/22 (36%)
LRR_8 64..123 CDD:290566 10/58 (17%)
leucine-rich repeat 65..88 CDD:275380 6/22 (27%)
leucine-rich repeat 89..112 CDD:275380 2/22 (9%)
leucine-rich repeat 113..136 CDD:275380 2/22 (9%)
LRR_RI 115..384 CDD:238064 72/268 (27%)
LRR_8 135..195 CDD:290566 21/59 (36%)
leucine-rich repeat 137..160 CDD:275380 9/22 (41%)
leucine-rich repeat 161..184 CDD:275380 8/22 (36%)
LRR_8 184..243 CDD:290566 19/58 (33%)
leucine-rich repeat 185..208 CDD:275380 5/22 (23%)
leucine-rich repeat 209..232 CDD:275380 10/22 (45%)
LRR_8 232..289 CDD:290566 15/56 (27%)
leucine-rich repeat 233..256 CDD:275380 4/22 (18%)
leucine-rich repeat 257..280 CDD:275380 9/22 (41%)
LRR_8 280..339 CDD:290566 16/58 (28%)
leucine-rich repeat 281..304 CDD:275380 6/22 (27%)
leucine-rich repeat 305..328 CDD:275380 6/22 (27%)
lrrtm1XP_002935525.1 LRRNT 38..>61 CDD:214470 5/44 (11%)
LRR 53..>316 CDD:227223 83/316 (26%)
leucine-rich repeat 70..90 CDD:275380 9/19 (47%)
leucine-rich repeat 91..114 CDD:275380 8/22 (36%)
LRR_8 114..173 CDD:338972 19/58 (33%)
leucine-rich repeat 115..138 CDD:275380 5/22 (23%)
leucine-rich repeat 139..162 CDD:275380 10/22 (45%)
leucine-rich repeat 163..186 CDD:275380 4/22 (18%)
leucine-rich repeat 187..210 CDD:275380 9/22 (41%)
leucine-rich repeat 211..234 CDD:275380 6/22 (27%)
leucine-rich repeat 235..257 CDD:275380 6/22 (27%)
leucine-rich repeat 258..281 CDD:275380 7/22 (32%)
leucine-rich repeat 282..300 CDD:275380 6/34 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.