DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18095 and lrrn1l

DIOPT Version :10

Sequence 1:NP_001188805.1 Gene:CG18095 / 34823 FlyBaseID:FBgn0028872 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001106456.1 Gene:lrrn1l / 100127637 XenbaseID:XB-GENE-492890 Length:738 Species:Xenopus tropicalis


Alignment Length:463 Identity:117/463 - (25%)
Similarity:179/463 - (38%) Gaps:105/463 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 DLDDFSL-----NGLTKLQYLSLSHNNLSSLRSWSSEPLGALTNLDLSHNMLSKLSVKSFEQYPQ 136
            |.:|..|     |..|.:|.|.|..|.:|.| :|..:.|..||.||||.|....:.........|
 Frog    63 DCNDLLLTHIPENLSTDIQVLLLQSNKISHL-TWELQELSNLTELDLSQNHFQSIDDLGVSNLSQ 126

  Fly   137 LQQLDLRYNRISQIENDSFDGLSHLKHLYLNGNQLAHIDGSFFRGLHRLSSLSLQHNRIEFIEMD 201
            |..|.|..|::.::.:.|...|..|:.||:|.||:::|....|.||.||..|.|..||:|.|:..
 Frog   127 LITLYLEENQLRELPDYSLKDLGSLEELYINHNQISYIGPRAFSGLGRLLRLHLNANRLEIIDPR 191

  Fly   202 SFESNTHLRSLRLDQNLLSSLQFLSQRGLARLVHLNLSSNLLQKLEPFVFSKNFELQDLDLSYNN 266
            .||...:|..|.:.:|.:::||.|:.:.|.||..|.|:              ..||:.:.     
 Frog   192 WFEDLPNLEILMVGENPVTALQSLNFQPLGRLHSLVLA--------------GMELEHIP----- 237

  Fly   267 ITKLNKEALSGLDSLERLNISHNYVDKIYDESLDSLIALLQLDISFNLLTTLPDNLFHFNTQLEE 331
                 :.|..|||.||.|:...|.:.::..|:|.:|..|..||::.|.:..:....|.....|||
 Frog   238 -----ENAFQGLDYLESLSFFDNRLTEVPKEALKNLKLLKFLDLNKNPIPEIRGGDFTGMEHLEE 297

  Fly   332 IILANNKIEEISSQMMFNQNHLRYIKLSGNAISDAAFLDRLSPSVNRFTLYVD---LSSN--RLK 391
            :.|  |.:||:.             ::...|..|...|.:|....|....|:|   .|||  .||
 Frog   298 LSL--NSMEELE-------------RVEAEAFQDLPELIKLEMCNNPRLSYLDPEAFSSNLGALK 347

  Fly   392 SLNLSSLLHFRYINLADNNWSCNWLVANLVQKLPNSVN---FARP--------WTVINNLSENTT 445
            :|.|             ||.....:...:.|.||..:.   ::.|        |..::.|  ...
 Frog   348 TLLL-------------NNNRLAMVPLKIFQALPGLLEISLYSNPIRCDCQNCWKGLSKL--RLI 397

  Fly   446 NVEGIDCI---------------EGGTNRSIILLDVSGVP--------QPKSDNCDCVVAYDETN 487
            ..:...||               :...||...|:|...:|        ||...:|..      :.
 Frog   398 EAQATLCINPPLVSGHLFQEIQGQAWLNRCPPLIDTHLIPPQFQIARHQPVKLSCQA------SG 456

  Fly   488 PSPPPLTW 495
            ...|.:.|
 Frog   457 HPKPEIYW 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18095NP_001188805.1 LRR 22..>338 CDD:443914 80/265 (30%)
leucine-rich repeat 41..64 CDD:275380
leucine-rich repeat 65..88 CDD:275380 4/15 (27%)
leucine-rich repeat 89..112 CDD:275380 8/22 (36%)
leucine-rich repeat 113..136 CDD:275380 7/22 (32%)
leucine-rich repeat 137..160 CDD:275380 6/22 (27%)
leucine-rich repeat 161..184 CDD:275380 10/22 (45%)
leucine-rich repeat 185..208 CDD:275380 9/22 (41%)
leucine-rich repeat 209..232 CDD:275380 7/22 (32%)
leucine-rich repeat 233..256 CDD:275380 3/22 (14%)
leucine-rich repeat 257..280 CDD:275380 4/22 (18%)
leucine-rich repeat 281..304 CDD:275380 7/22 (32%)
leucine-rich repeat 305..328 CDD:275380 5/22 (23%)
lrrn1lNP_001106456.1 leucine-rich repeat 60..79 CDD:275380 4/15 (27%)
LRR <78..419 CDD:443914 103/395 (26%)
leucine-rich repeat 80..102 CDD:275380 8/22 (36%)
leucine-rich repeat 103..126 CDD:275380 7/22 (32%)
leucine-rich repeat 127..150 CDD:275380 6/22 (27%)
leucine-rich repeat 151..174 CDD:275380 10/22 (45%)
leucine-rich repeat 175..198 CDD:275380 9/22 (41%)
leucine-rich repeat 199..222 CDD:275380 7/22 (32%)
leucine-rich repeat 223..246 CDD:275380 8/46 (17%)
leucine-rich repeat 247..294 CDD:275380 12/46 (26%)
leucine-rich repeat 295..319 CDD:275380 9/38 (24%)
leucine-rich repeat 320..345 CDD:275380 8/24 (33%)
leucine-rich repeat 346..367 CDD:275380 7/33 (21%)
leucine-rich repeat 370..382 CDD:275378 1/11 (9%)
IG_like 437..519 CDD:214653 6/34 (18%)
Ig strand B 448..452 CDD:409353 0/3 (0%)
Ig strand C 461..465 CDD:409353 1/4 (25%)
Ig strand E 485..489 CDD:409353
Ig strand F 499..504 CDD:409353
Ig strand G 512..515 CDD:409353
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.