DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hll and FAA4

DIOPT Version :9

Sequence 1:NP_609696.1 Gene:hll / 34822 FlyBaseID:FBgn0286723 Length:681 Species:Drosophila melanogaster
Sequence 2:NP_013974.1 Gene:FAA4 / 855288 SGDID:S000004860 Length:694 Species:Saccharomyces cerevisiae


Alignment Length:661 Identity:151/661 - (22%)
Similarity:261/661 - (39%) Gaps:112/661 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 WTTLTFGEYQERVEQAALMLLSVGVEE--RSSVGILAFNCPEWFFAEFGALRAGAVVAGVYPS-N 128
            :.|:|:.|....:......|:.:||:.  .:...|.|....:|.....|.:..|..|...|.: .
Yeast    97 YITMTYEEMICVMHDIGRGLIKIGVKPNGENKFHIFASTSHKWMKTFLGCMSQGIPVVTAYDTLG 161

  Fly   129 SAEAVHHVLATGESSVCVVDDAQQMAKLRAIKERLPRLKAVIQLHGPFEAFVDHEPG-------- 185
            .:..:|.::.|  .||.:..|.|.::||....:....:|.||. :.|.:.....:.|        
Yeast   162 ESGLIHSMVET--DSVAIFTDNQLLSKLAVPLKTAKNVKFVIH-NEPIDPSDKRQNGKLYKAAKD 223

  Fly   186 -------------YFSWQKLQEQTFSSELKEELLARESRIRANECAMLIFTSGTVGMPKAVMLSH 237
                         .:|:.::.|  ...:.|:|:.....:.....|.|  :|||:.|.||.|:|:|
Yeast   224 AVDKIKEVRPDIKIYSFDEIIE--IGKKAKDEVELHFPKPEDPACIM--YTSGSTGTPKGVVLTH 284

  Fly   238 DNLVFDTKSAAAHMQDIQVG-KESFVSYLPLSHVAAQIFDV-------FLGLSHAGCVTFADKDA 294
            .|:|... ....|.....:| .:..:::|||:|:....|:.       .||.::...:|......
Yeast   285 YNIVAGI-GGVGHNVIGWIGPTDRIIAFLPLAHIFELTFEFEAFYWNGILGYANVKTLTPTSTRN 348

  Fly   295 LKGTLIKTFRKARPTKMFGVPRVFEKLQERLVAAEAKARPYSRLLLARARAAVAEHQTTLMAGKS 359
            .:|.|:    :.:||.|.||..|:|.:::.::|...:...:|:.|.           .|:.|.|.
Yeast   349 CQGDLM----EFKPTVMVGVAAVWETVRKGILAKINELPGWSQTLF-----------WTVYALKE 398

  Fly   360 PSIYGNAKYWLACRVVKPIREMIGVDNCRVFFTGGAPTSEELKQFFLGLDIALGECYGMSE-TSG 423
            .:|  .....|:..:.|.|||..| .|.|....||:..|.:.::|...|...:...||::| .:.
Yeast   399 RNI--PCSGLLSGLIFKRIREATG-GNLRFILNGGSAISIDAQKFLSNLLCPMLIGYGLTEGVAN 460

  Fly   424 AITLNVDISNLYSAGQACEGVTLKIHEPD------CNGQGEILMRGRLVFMGYLGLPDKTEETVK 482
            |..|..:..:...||.....:|.|:.:.:      .|.|||:|.:|..:...|...|::|.....
Yeast   461 ACVLEPEHFDYGIAGDLVGTITAKLVDVEDLGYFAKNNQGELLFKGAPICSEYYKNPEETAAAFT 525

  Fly   483 EDGWLHSGDLGYIDPKGNLIISGRLKELIITAGGENIPPVHIEELIKKELPCVSNVLLIGDHRKY 547
            :|||..:||:....|||.:.|..|.|.|:.|..||.|....:|.:.:.. |.|.|:.:..|..|.
Yeast   526 DDGWFRTGDIAEWTPKGQVKIIDRKKNLVKTLNGEYIALEKLESIYRSN-PYVQNICVYADENKV 589

  Fly   548 LTV-----LLSLKTKCDAKTGIPLDALREETIEWLRDLDIHETRLSELLNIPADLQLPNDTAALA 607
            ..|     .|...:|...:.||.:..   |.:|..    |||.:|.:               |:.
Yeast   590 KPVGIVVPNLGHLSKLAIELGIMVPG---EDVESY----IHEKKLQD---------------AVC 632

  Fly   608 ATLEITAKPKLLEAIEE--GIKRANKYAISNAQKVQKFALIAHEFSVATGELGPTLKIRRNIVHA 670
            ..:..|||.:.|..||.  ||                 .....|::...|.:....|::|..:.|
Yeast   633 KDMLSTAKSQGLNGIELLCGI-----------------VFFEEEWTPENGLVTSAQKLKRRDILA 680

  Fly   671 KYAKVIERLYK 681
            .....:||:||
Yeast   681 AVKPDVERVYK 691

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hllNP_609696.1 AFD_class_I 62..680 CDD:388389 149/658 (23%)
FAA4NP_013974.1 LC_FACS_euk1 96..678 CDD:341294 146/646 (23%)
PRK04319 <230..>285 CDD:235279 14/58 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1022
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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