DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hll and CG9993

DIOPT Version :9

Sequence 1:NP_609696.1 Gene:hll / 34822 FlyBaseID:FBgn0286723 Length:681 Species:Drosophila melanogaster
Sequence 2:NP_611518.1 Gene:CG9993 / 37358 FlyBaseID:FBgn0034553 Length:543 Species:Drosophila melanogaster


Alignment Length:526 Identity:125/526 - (23%)
Similarity:196/526 - (37%) Gaps:101/526 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 PPQTIPEFFKESCEKYSDLPALVWETPGSGNDGWTTLTFGEYQERVEQAALMLLSVGVEERSSVG 98
            |..|:.|........|||....|::..|.      .||..:..|:..:.|.....:.::....||
  Fly    24 PDMTLGEVALIILRLYSDKVMQVYDPTGE------ELTGSQLLEQSRRLAHAFQRLKLQRGDVVG 82

  Fly    99 ILAFNCPEWFFAEFGALRAGAVVAGVYPSNSAEAVHHVLATGESSV--CVVDDAQQMAKLRAIKE 161
            |.|.|..........||..|..:..::|...||...::....:..|  |.:|:.|   .|.|:|.
  Fly    83 ISAKNTTYLTEVVIAALLNGTPINPLHPDFDAETTAYMFEITKPKVIFCDLDNYQ---TLSAVKS 144

  Fly   162 RLPRLKAVIQLHGPFEAFVDHEPGYFSWQKLQEQTFSSELKEELLARESRIRANECAMLIFTSGT 226
            .|.....:|.|.|..       ||..:.|.|.....:. ..|:.|.....:..::.|.:|.:||.
  Fly   145 SLKFKTEIILLTGTL-------PGVRNIQDLLADGCTG-YDEKTLFACPHLCGDDTAFIITSSGV 201

  Fly   227 VGMPKAVMLSHDNLVFDTKSAAAHMQDIQVGKESFVSYLPLSHVAAQIFDVFLGLSHAGCVTFAD 291
            .|:||.|..||.:|:...|                   :|....:..:...|..|....|:.   
  Fly   202 TGLPKGVTRSHRSLLNSAK-------------------IPQLFTSDTVLFCFSPLYWISCIF--- 244

  Fly   292 KDALKGTLIKTFRKARPTKMFGVPRVFEKLQERLVAAEAKARPYSRLLLARARAAVAEHQTTLMA 356
              .|..:|:...|:....:.|.| ..|..|.||...:.....|:...|||::    .|.|.  :|
  Fly   245 --TLLASLVNGCRRIITNRPFSV-AYFADLVERHQVSFVLTVPHHMALLAKS----PERQE--LA 300

  Fly   357 GKSPSIYGNAKYWLACR-------VVKPIREMIGVDNCRVFFTGGAPTSEELKQFFLGLDIALGE 414
            .|...:..     ..|.       :.:.:.|::|.:...|.                        
  Fly   301 AKMQCVQS-----FVCSGSKVPMGIWRQLYELLGANRFAVL------------------------ 336

  Fly   415 CYGMSETSGAITLNVDISNLYSAGQACEGVTLKIHEPDCNGQ-------GEILMRGRLVFMGYLG 472
             ||::|| |.|:.||. ..|.|.|:....|.:::.:|  :||       |:||:|..|.:.||..
  Fly   337 -YGLTET-GGISKNVG-GPLGSEGRLLRNVQVRVVDP--HGQSLGPNQTGQILVRLNLRWGGYYH 396

  Fly   473 LPDKTEETVKEDG-WLHSGDLGYIDPKGNLIISGRLKELIITAGGENIPPVHIEELIKKELPCVS 536
            .|.:|:.||..|| ||.:||.||.|.:|.|....|..: :.......|.|..||::| ..||.|.
  Fly   397 NPQETQVTVTPDGKWLLTGDHGYFDDEGCLHFQSRDTD-VFKYNHFPIYPKQIEDVI-LHLPGVH 459

  Fly   537 NVLLIG 542
            .|.:.|
  Fly   460 EVAVFG 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hllNP_609696.1 AFD_class_I 62..680 CDD:388389 117/498 (23%)
CG9993NP_611518.1 CaiC 21..532 CDD:223395 125/526 (24%)
AFD_class_I 45..528 CDD:302604 119/505 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452222
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24096
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

Return to query results.
Submit another query.