DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hll and acs-3

DIOPT Version :9

Sequence 1:NP_609696.1 Gene:hll / 34822 FlyBaseID:FBgn0286723 Length:681 Species:Drosophila melanogaster
Sequence 2:NP_503540.1 Gene:acs-3 / 178677 WormBaseID:WBGene00020343 Length:653 Species:Caenorhabditis elegans


Alignment Length:737 Identity:176/737 - (23%)
Similarity:291/737 - (39%) Gaps:167/737 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 KLRLDEPSSFSQTVPPQTIPEFFKESCEKYSDLPALVWETPGSGNDG-----WTTLT-------- 71
            |..|..|..||:.|..   ||..:||.:    :|..:...|    ||     |..||        
 Worm     4 KKMLTHPELFSRLVDG---PERIRESVQ----VPKPITGCP----DGITKTVWDVLTRSAQLNPN 57

  Fly    72 ---FGE----------YQERVEQAALM---LLSVGVEERSS---VGILAFNCPEWFFAEFGALRA 117
               |||          |:|.||:|.::   ::::..:.:|:   :||...:..::.....|....
 Worm    58 APLFGESVNGRHVYTTYREAVEEATIIGSGIVAIMQKNQSTNKLIGIAGIHSRKYMHTMHGISGF 122

  Fly   118 GAVVAGVYPSNSAEAVHHVLATGESSVCVVDDAQQMAKLRAIK--ERLPRLKAVI--------QL 172
            ......:|..:..|.:..::...:..:...::|::.....:.|  :||..||.:|        |.
 Worm   123 DLTTVPLYHQSKLETLCDIIDNCKLEIIFCENAKRAEGFLSSKLGDRLRSLKTLIILDKTTTLQK 187

  Fly   173 HGPFEAFVDHEPGYFSWQKLQEQTFSSELKEELLARESR----IRANECAMLIFTSGTVGMPKAV 233
            |...|                  ..|.:..:|:..|..|    .:.....::..||||.|.||.|
 Worm   188 HDDVE------------------VMSLDEFKEIGKRNKRNPVKPKPETTYVICHTSGTTGRPKGV 234

  Fly   234 MLSHDNLVFD-----TKSAAAHMQDIQVGKESFVSYLPLSHV---AAQIFDVFLGLSHAGCVTFA 290
            .:||.:||..     |....|:.....: ::::.|:|.|:|:   ..|...::.|    |.:...
 Worm   235 EMSHGSLVTSVSGIFTSWTIAYKWKFGL-EDTYFSFLSLAHIYEHLIQTLTIYFG----GKIGIY 294

  Fly   291 DKDALKGTLIKTFRKARPTKMFGVPRVFEKLQERLVAAEAKARPYSRLLLARARAAVAEHQTTLM 355
            |.:.  .|||...:|..||.:..|||:..||.|.:....||....:|.|...|:...|..   |.
 Worm   295 DGNT--ATLIPQIQKLEPTIVSLVPRLLNKLYEAVHDGVAKKGFIARKLFDYAKKTKARQ---LQ 354

  Fly   356 AG--KSPSIYGNAKYWLACRVVKPIREMIGVDNCRVFFTGGAPTSEELKQFF-LGLDIALGECYG 417
            .|  :..:.:...       |.|.::.|:| ...:|..:||||.::|:|.|. ......|.|.||
 Worm   355 RGVLRYDTFFDKI-------VFKKLKLMLG-GKLKVLTSGGAPITKEVKTFTRYAYGCPLVEGYG 411

  Fly   418 MSETSGAITLNVDISNLY-SAGQACEGVTLKIHE-PD-----CNGQGEILMRGRLVFMGYLGLPD 475
            .:|.|.|.||.:.....| :.|.......:|:.: |:     .|.:||:..||..:..||...|:
 Worm   412 QTECSAAGTLTLPWDTTYGNVGGPAPWAQVKLVDVPEKNYFSMNDEGEVCFRGNAMMTGYFQDPE 476

  Fly   476 KTEETVKEDGWLHSGDLGYIDPKGNLIISGRLKELIITAGGENIPPVHIEELIKKELPCVSNVLL 540
            .|.:|:..:||||:||:|...|.|.|.|..|..|:...:.|:.:.|:.||.:.... |.::.:.:
 Worm   477 LTAKTIDSEGWLHTGDIGKWLPTGGLQIIDRKNEMFKLSQGDFVSPIQIEAIYANS-PLITQIYV 540

  Fly   541 IGDHRKYLTVLLSLKTKCDAKTGIPLDALREETIEWLRDLDIHETRLSELLNIPADLQLPNDTAA 605
            .|            ||:.....||                        .:|::|...|||     
 Worm   541 TG------------KTERSFLVGI------------------------VVLDLPRFKQLP----- 564

  Fly   606 LAATLEITAKPKLLEAIEEG--IKRA-----NKYAISNA----QKVQKFALIAHEFSVATGELGP 659
            |...|:   ..:.:|.|.|.  :|.|     ||||..|.    :.::...|...||:...|.:..
 Worm   565 LVKALD---GKESIEMIMENKEVKNAVIAELNKYAKQNGLQTIELIRNVHLTLQEFTEENGLITS 626

  Fly   660 TLKIRRNIVHAKYAKVIERLYK 681
            |||.||.|:...:|..|.::||
 Worm   627 TLKNRRKILEDYFAPQIAKMYK 648

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hllNP_609696.1 AFD_class_I 62..680 CDD:388389 162/692 (23%)
acs-3NP_503540.1 LC-FACS_euk 67..648 CDD:341250 154/661 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1022
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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