DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hll and Acsl6

DIOPT Version :9

Sequence 1:NP_609696.1 Gene:hll / 34822 FlyBaseID:FBgn0286723 Length:681 Species:Drosophila melanogaster
Sequence 2:XP_006246283.2 Gene:Acsl6 / 117243 RGDID:69403 Length:722 Species:Rattus norvegicus


Alignment Length:683 Identity:179/683 - (26%)
Similarity:286/683 - (41%) Gaps:117/683 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 QTIPEFFKESCEKYSDLPALVWETPGSGNDGWTTLTFGEYQERVEQAALMLL----SVGVEERSS 96
            :|:.:.|:.......:.|.|.:..|   ...:..|::.|..:|.|.....||    .||.|:  .
  Rat   115 RTMYQVFRRGLSISGNGPCLGFRKP---EQPYQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQ--F 174

  Fly    97 VGILAFNCPEWFFAEFGALRAGAVVAGVYPSNSAEAVHHVLATGESSVCVVDDAQQMAKLRAIKE 161
            :|:.|.|.|||..||........||..:|.:....::.:::.|.:....:||...:...|....|
  Rat   175 IGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVE 239

  Fly   162 R--LPRLKAVIQLHGPFEAFVDHEPGYFSWQKLQEQTFSSELKEELLARESRI----RANECAML 220
            |  .|.||.|| |..||:..: .|.|    :|......|.:..|:......|:    |.::.:::
  Rat   240 RKETPGLKLVI-LMEPFDDAL-RERG----KKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIV 298

  Fly   221 IFTSGTVGMPKAVMLSHDNLVFD-------TKSAAAHMQDIQVGKESFVSYLPLSHVAAQIFDVF 278
            .|||||.|.||..||:|.|:|.|       |:......||     :..:|:|||:|:..::....
  Rat   299 CFTSGTTGNPKGAMLTHGNVVADFSGFLKVTEKVIFPRQD-----DVLISFLPLAHMFERVIQSV 358

  Fly   279 LGLSHAGCVTFADKDALKGTLIKTFRKA-RPTKMFGVPRVFEKLQERLV-AAEAKARPYSRLLLA 341
            : ..|.|.|.|...|.   .|:....|| |||....|||:..::.:::. .|:...:.:  ||..
  Rat   359 V-YCHGGRVGFFQGDI---RLLSDDMKALRPTIFPVVPRLLNRMYDKIFHQADTSLKRW--LLEF 417

  Fly   342 RARAAVAEHQTTLMAGKSPSIYGNAKYWLACRVVKPIREMIGVDNCRVFFTGGAPTSEELKQFFL 406
            .|:...||.::.::  ::.||:....:       ..|:..:| .:.|:..||.||.|..:..|  
  Rat   418 AAKRKQAEVRSGII--RNNSIWDELFF-------NKIQASLG-GHVRMIVTGAAPASPTVLGF-- 470

  Fly   407 GLDIALG----ECYGMSETSGAITLNVD---ISNLYSAGQACEGVTLKIHEPDCN-----GQGEI 459
             |..|||    |.||.:|.:...|....   .|....|...|..:.| :...:.|     |:|||
  Rat   471 -LRAALGCQVYEGYGQTECTAGCTFTTPGDWTSGHVGAPLPCNHIKL-VDAEELNYWTSKGEGEI 533

  Fly   460 LMRGRLVFMGYLGLPDKTEETVKEDGWLHSGDLGYIDPKGNLIISGRLKELIITAGGENIPPVHI 524
            .::|..||.|||...|:|:|.:..|||||:||:|...|:|.|.|..|.|.:...|.||.:.|..|
  Rat   534 CVKGPNVFKGYLKDEDRTKEALDSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKI 598

  Fly   525 EELIKKELPCVSNVLLIGDHRKYLTVLLSLK----TKCDA-KTGIPLDALREETIEWLRDLDIHE 584
            |.:..:..| |:.:.:.||..|...|.:.:.    ..|.| |.||                   |
  Rat   599 ENIYIRSEP-VAQIYVHGDSLKAFLVGIVVPDPEVMPCWAQKKGI-------------------E 643

  Fly   585 TRLSELLNIPADLQLPNDTAALAATLEITAKPKLLE--AIEEGIKRANKYAISNAQKVQKFALIA 647
            ....||                       .|.|.|:  .:::.:....:..:.:.::|:...:..
  Rat   644 GNYQEL-----------------------CKSKELKKAILDDMVMLGKESGLHSFEQVKAIYIHC 685

  Fly   648 HEFSVATGELGPTLKIRRNIVHAKYAKVIERLY 680
            ..|||..|.|.||||.:|..:...:.|.||.||
  Rat   686 DMFSVQNGLLTPTLKAKRPELREYFKKQIEELY 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hllNP_609696.1 AFD_class_I 62..680 CDD:388389 172/655 (26%)
Acsl6XP_006246283.2 LC-FACS_euk 141..719 CDD:341250 174/654 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342996
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.