DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and AT1G06840

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_172169.2 Gene:AT1G06840 / 837196 AraportID:AT1G06840 Length:953 Species:Arabidopsis thaliana


Alignment Length:722 Identity:158/722 - (21%)
Similarity:255/722 - (35%) Gaps:213/722 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   301 LEALNLGSNLLTIINDEDFPRMPNLIVLLLKRNQIMKISAGALKNLTALKVLELDDNLIS-SLPE 364
            |.::||..||     ..:..|:..|.:|....|:|.......:.|:.:|::|.|:.||:: :|||
plant    90 LFSMNLSGNL-----SPELGRLSRLTILSFMWNKITGSIPKEIGNIKSLELLLLNGNLLNGNLPE 149

  Fly   365 GLSKLSQLQELSITSNRLRWINDTELPRSMQMLD------MRANPLSTISPGAFRGMSKLRKLIL 423
            .|..|..|..:.|..||:    ...||:|...|:      |..|.:|...|.....:..:..::|
plant   150 ELGFLPNLDRIQIDENRI----SGPLPKSFANLNKTKHFHMNNNSISGQIPPELGSLPSIVHILL 210

  Fly   424 SDVRTLRSF--PELEACHALEILKLDRAGIQ--EVPANLCRQTPRLKSLELKTNSLK-RIPNLSS 483
             |...|..:  |||.....|.||:||.....  .:|.:....:..|| :.|:..||: .:|:|||
plant   211 -DNNNLSGYLPPELSNMPRLLILQLDNNHFDGTTIPQSYGNMSKLLK-MSLRNCSLQGPVPDLSS 273

  Fly   484 CRDLRLLDLSSNQIEKIQGKPFNG---LKQLNDLL----LSYNRIKALPQDAFQGIPKLQLLDLE 541
            ..:|..||||.||:        ||   ..:|:|.:    ||.|.:.......|.|:|:||.|.|.
plant   274 IPNLGYLDLSQNQL--------NGSIPAGKLSDSITTIDLSNNSLTGTIPTNFSGLPRLQKLSLA 330

  Fly   542 GNEIS-------YIHKEAFSGFTALEDLNLGNNIFPELP-ESGLRA----------------LLH 582
            .|.:|       :..:|..|..:.:.||.  ||.|..:. .|.||.                ||.
plant   331 NNALSGSIPSRIWQERELNSTESIIVDLR--NNGFSNISGRSDLRPNVTVWLQGNPLCSDGNLLR 393

  Fly   583 L------------KTFNNPKL-REFPPPDTF---PRIQTLILSYAYHCCAFLPLVAMSSQKKTSQ 631
            |            .|.:|..: .:.|||..|   |         ...|....||: :..:.|:..
plant   394 LCGPITEEDINQGSTNSNTTICSDCPPPYEFSPEP---------LRRCFCAAPLL-VGYRLKSPG 448

  Fly   632 VQEAVLFPSDAEFDMTLWNNSMMNIWPQMHNLSKQLGASMHDPWETAINFNEEQLQTQTGGQIAT 696
            ..:.|  |..:||:..:.:...:|::                      ....:..|.|.|.:   
plant   449 FSDFV--PYRSEFEQYITSGLSLNLY----------------------QLRLDSFQWQKGPR--- 486

  Fly   697 SYMEEYFEEHDVSGPATGYGF---------GTGLFSGMSTEDFQPGSVQCLPMPGPFLPCADLFD 752
              :..|.:...|.|......|         ..|:|:|.:..|                  .|||.
plant   487 --LRMYLKFFPVFGSNANNSFIFNRSEVRRIRGMFTGWNIRD------------------EDLFG 531

  Fly   753 WWTLRCGVWVVFLLSLLGNGTVVFVLLCSRSKMDVPRFLVCNLAAADFFMGIYLGIL--AIVDAA 815
            .:.|                 :.|.||      ||.|.:..:.:.:....|...||:  ::..|.
plant   532 PYEL-----------------MNFTLL------DVYRDVFPSASPSGLSNGAVAGIVLGSVAAAV 573

  Fly   816 TLGEFRMFAIPWQMSVLCQLSGFLAVL----SSELSV-------YTLAVITLERNYAITHAIHLN 869
            ||     .||...:.:..::.|:.||.    ||:.|:       :|.|.:.|..:       :.|
plant   574 TL-----TAIIALIIMRKRMRGYSAVARRKRSSKASLKIEGVKSFTYAELALATD-------NFN 626

  Fly   870 KRLSLKQAGY------IMSVGWVFAL-------------IMALMPLVGVSDYRKFAVCLPFETTT 915
            ....:.|.||      .:..|.|.|:             .:..:.|:....:|.....|.|....
plant   627 SSTQIGQGGYGKVYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEE 691

  Fly   916 GPASLTY 922
            |...|.|
plant   692 GEQMLVY 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064 25/82 (30%)
leucine-rich repeat 183..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..311 CDD:290566 4/9 (44%)
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
LRR_8 299..359 CDD:290566 15/57 (26%)
leucine-rich repeat 301..324 CDD:275380 6/22 (27%)
leucine-rich repeat 325..348 CDD:275380 5/22 (23%)
LRR_RI 327..567 CDD:238064 74/265 (28%)
leucine-rich repeat 349..371 CDD:275380 10/22 (45%)
LRR_8 370..425 CDD:290566 13/60 (22%)
leucine-rich repeat 372..393 CDD:275380 6/20 (30%)
leucine-rich repeat 394..415 CDD:275380 5/26 (19%)
leucine-rich repeat 418..486 CDD:275380 21/72 (29%)
leucine-rich repeat 441..464 CDD:275378 6/24 (25%)
LRR_8 487..545 CDD:290566 22/64 (34%)
leucine-rich repeat 487..510 CDD:275380 9/25 (36%)
leucine-rich repeat 511..534 CDD:275380 7/26 (27%)
LRR_8 533..589 CDD:290566 21/91 (23%)
leucine-rich repeat 535..558 CDD:275380 8/29 (28%)
leucine-rich repeat 559..580 CDD:275380 8/37 (22%)
7tm_4 764..>892 CDD:304433 30/159 (19%)
7tm_1 770..1017 CDD:278431 37/185 (20%)
AT1G06840NP_172169.2 PLN00113 37..895 CDD:215061 158/722 (22%)
leucine-rich repeat 90..108 CDD:275380 6/22 (27%)
leucine-rich repeat 109..132 CDD:275380 5/22 (23%)
leucine-rich repeat 133..156 CDD:275380 10/22 (45%)
leucine-rich repeat 157..180 CDD:275380 8/26 (31%)
leucine-rich repeat 181..204 CDD:275380 4/22 (18%)
leucine-rich repeat 205..228 CDD:275380 6/23 (26%)
leucine-rich repeat 229..276 CDD:275380 15/47 (32%)
leucine-rich repeat 277..299 CDD:275380 10/29 (34%)
leucine-rich repeat 300..323 CDD:275380 5/22 (23%)
leucine-rich repeat 351..375 CDD:275378 8/25 (32%)
STKc_IRAK 631..897 CDD:270968 13/68 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.