DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and AT4G28650

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_194594.1 Gene:AT4G28650 / 828983 AraportID:AT4G28650 Length:1013 Species:Arabidopsis thaliana


Alignment Length:591 Identity:147/591 - (24%)
Similarity:219/591 - (37%) Gaps:108/591 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 MLPSADPEKEAQILYEKSLQEYHGSQLSTASTATDVIAGKRTLHSICERW----LQKHCHCTG-- 156
            :|.|.|...|..:|            ||..||..|.:       :..:.|    ...||:.||  
plant    21 VLASIDNVNELSVL------------LSVKSTLVDPL-------NFLKDWKLSDTSDHCNWTGVR 66

  Fly   157 -----------------------------SLEVLRLSCRGIGILAVPVNLPNEVVVLDLGNNNLT 192
                                         ||....:||.|...| :|.::| .:..:|:..|:. 
plant    67 CNSNGNVEKLDLAGMNLTGKISDSISQLSSLVSFNISCNGFESL-LPKSIP-PLKSIDISQNSF- 128

  Fly   193 KLEANSFFMAPN----LEELTLSDNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQL 253
               :.|.|:..|    |..|..|.|::..........|..|:.|.|:....:...|.||:.|.:|
plant   129 ---SGSLFLFSNESLGLVHLNASGNNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKL 190

  Fly   254 TSLQLNGNALVSLDGDCLGHLQKLRTLRLEGNLFYRIPTNALAGLRTLEALNLGSNLLTIINDED 318
            ..|.|:||.|.......||.|..|.|..|..|.|..........:.:|:.|:|....|:.....:
plant   191 RFLGLSGNNLTGELPSVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSE 255

  Fly   319 FPRMPNLIVLLLKRNQIMKISAGALKNLTALKVLELDDN-------------------------L 358
            ..::.:|..|||..|.........:.::|.||||:..||                         |
plant   256 LGKLKSLETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKL 320

  Fly   359 ISSLPEGLSKLSQLQELSITSNRLRWINDTELPRS------MQMLDMRANPLSTISPGAFRGMSK 417
            ..|:|..:|.|:|||.|.:.:|.|    ..|||..      :|.||:.:|..|...|........
plant   321 SGSIPPAISSLAQLQVLELWNNTL----SGELPSDLGKNSPLQWLDVSSNSFSGEIPSTLCNKGN 381

  Fly   418 LRKLILSDVRTLRSFP-ELEACHALEILKLDRAGIQ-EVPANLCRQTPRLKSLELKTNSLK-RIP 479
            |.||||.:.......| .|..|.:|..:::....:. .:|... .:..:|:.|||..|.|. .||
plant   382 LTKLILFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGF-GKLEKLQRLELAGNRLSGGIP 445

  Fly   480 -NLSSCRDLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQDAFQGIPKLQLLDLEGN 543
             ::|....|..:|.|.|||..........:..|...|::.|.|.....|.||..|.|..|||..|
plant   446 GDISDSVSLSFIDFSRNQIRSSLPSTILSIHNLQAFLVADNFISGEVPDQFQDCPSLSNLDLSSN 510

  Fly   544 EISYIHKEAFSGFTALEDLNL-GNNIFPELPE--SGLRALLHLKTFNNPKLREFPPP-DTFPRIQ 604
            .::.....:.:....|..||| .||:..|:|.  :.:.||..|...||......|.. .|.|.::
plant   511 TLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPESIGTSPALE 575

  Fly   605 TLILSY 610
            .|.:||
plant   576 LLNVSY 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 6/20 (30%)
LRR_RI 180..>383 CDD:238064 57/231 (25%)
leucine-rich repeat 183..204 CDD:275380 4/20 (20%)
LRR_8 203..263 CDD:290566 18/63 (29%)
leucine-rich repeat 205..228 CDD:275380 5/22 (23%)
leucine-rich repeat 229..252 CDD:275380 7/22 (32%)
LRR_8 252..311 CDD:290566 17/58 (29%)
leucine-rich repeat 253..276 CDD:275380 9/22 (41%)
leucine-rich repeat 277..300 CDD:275380 5/22 (23%)
LRR_8 299..359 CDD:290566 16/84 (19%)
leucine-rich repeat 301..324 CDD:275380 4/22 (18%)
leucine-rich repeat 325..348 CDD:275380 5/22 (23%)
LRR_RI 327..567 CDD:238064 73/275 (27%)
leucine-rich repeat 349..371 CDD:275380 11/46 (24%)
LRR_8 370..425 CDD:290566 20/60 (33%)
leucine-rich repeat 372..393 CDD:275380 8/20 (40%)
leucine-rich repeat 394..415 CDD:275380 6/20 (30%)
leucine-rich repeat 418..486 CDD:275380 19/71 (27%)
leucine-rich repeat 441..464 CDD:275378 2/23 (9%)
LRR_8 487..545 CDD:290566 19/57 (33%)
leucine-rich repeat 487..510 CDD:275380 6/22 (27%)
leucine-rich repeat 511..534 CDD:275380 7/22 (32%)
LRR_8 533..589 CDD:290566 18/58 (31%)
leucine-rich repeat 535..558 CDD:275380 5/22 (23%)
leucine-rich repeat 559..580 CDD:275380 8/23 (35%)
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
AT4G28650NP_194594.1 PLN00113 27..986 CDD:215061 144/585 (25%)
leucine-rich repeat 73..96 CDD:275380 0/22 (0%)
leucine-rich repeat 97..117 CDD:275380 7/21 (33%)
leucine-rich repeat 118..141 CDD:275380 5/26 (19%)
leucine-rich repeat 142..165 CDD:275380 5/22 (23%)
leucine-rich repeat 166..189 CDD:275380 7/22 (32%)
leucine-rich repeat 190..213 CDD:275380 9/22 (41%)
leucine-rich repeat 214..237 CDD:275380 5/22 (23%)
leucine-rich repeat 238..261 CDD:275380 4/22 (18%)
leucine-rich repeat 262..285 CDD:275380 5/22 (23%)
leucine-rich repeat 286..333 CDD:275380 11/46 (24%)
leucine-rich repeat 334..354 CDD:275380 8/23 (35%)
leucine-rich repeat 358..381 CDD:275380 6/22 (27%)
leucine-rich repeat 382..405 CDD:275380 8/22 (36%)
leucine-rich repeat 406..429 CDD:275380 2/23 (9%)
leucine-rich repeat 430..453 CDD:275380 9/22 (41%)
leucine-rich repeat 454..501 CDD:275380 13/46 (28%)
leucine-rich repeat 502..525 CDD:275380 5/22 (23%)
leucine-rich repeat 526..549 CDD:275380 8/22 (36%)
leucine-rich repeat 550..573 CDD:275380 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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