DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and AT4G08850

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_849538.2 Gene:AT4G08850 / 826456 AraportID:AT4G08850 Length:1045 Species:Arabidopsis thaliana


Alignment Length:674 Identity:163/674 - (24%)
Similarity:265/674 - (39%) Gaps:80/674 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 VNRTSKSASVTPTGIRENVMLPSADPEKEAQILYEKSL-----------QEYHGSQLSTASTATD 132
            :|:|:....::.|..:|.  :...:..::.|:|...|:           .|...:.|...||.|:
plant     1 MNKTNPERKISLTSFKER--MACKEKPRDLQVLLIISIVLSCSFAVSATVEEANALLKWKSTFTN 63

  Fly   133 VIAGKR-------TLHSICERWLQKHCHCTGSLEVLRLSCRGIGILAV----PV-NLPNEVVVLD 185
            ..:..:       ...|.|..|....| ..||  ::||:....||...    |. :||| :..:|
plant    64 QTSSSKLSSWVNPNTSSFCTSWYGVAC-SLGS--IIRLNLTNTGIEGTFEDFPFSSLPN-LTFVD 124

  Fly   186 LGNNNLTKLEANSFFMAPNLEELTLSDNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGL 250
            |..|..:...:..:.....||...||.|.::...|.....|:.|..|.|....|....|.....|
plant   125 LSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRL 189

  Fly   251 AQLTSLQLNGNALVSLDGDCLGHLQKLRTLRLEGN-LFYRIPTNALAGLRTLEALNLGSNLLTII 314
            .::|.:.:..|.|........|:|.||..|.|..| |...||:. :..|..|..|.|..|.||..
plant   190 TKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSE-IGNLPNLRELCLDRNNLTGK 253

  Fly   315 NDEDFPRMPNLIVLLLKRNQIMKISAGALKNLTALKVLELDDN-LISSLPEGLSKLSQLQELSIT 378
            ....|..:.|:.:|.:..||:.......:.|:|||..|.|..| |...:|..|..:..|..|.:.
plant   254 IPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLY 318

  Fly   379 SNRLRWINDTELPRSMQMLDMR--ANPLSTISPGAFRGMSKLRKLILSDVRTLRSFPE-LEACHA 440
            .|:|......||.....|:|:.  .|.|:...|.:|..::.|..|.|.|.:.....|. :.....
plant   319 LNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTE 383

  Fly   441 LEILKLDRAGIQE-VPANLCRQTPRLKSLELKTNSLK-RIP-NLSSCRD---------------- 486
            |.:|:||...... :|..:|| ..:|::|.|..|..: .:| :|..|:.                
plant   384 LTVLQLDTNNFTGFLPDTICR-GGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDIS 447

  Fly   487 --------LRLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIK-ALPQDAFQGIPKLQLLDLEG 542
                    |..:|||:|.........:...::|...:||.|.|. |:|.:.: .:.:|..|||..
plant   448 EAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIW-NMTQLSQLDLSS 511

  Fly   543 NEISYIHKEAFSGFTALEDLNL-GNNIFPELPESGLRALLHLKTF---NNPKLREFPPP-DTFPR 602
            |.|:....|:.|....:..|.| ||.:..::| ||:|.|.:|:..   :|....|.||. :..||
plant   512 NRITGELPESISNINRISKLQLNGNRLSGKIP-SGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPR 575

  Fly   603 IQTLILSYAYHCCAFLPLVAMSSQKKTSQVQEAVLFPSDAEFDMTLWNNSMMNIWP---QMHNLS 664
            :..:.||.     ..|.........|.||:|...|..:..:.:::....|:.|:..   ..:|||
plant   576 LYYMNLSR-----NDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLS 635

  Fly   665 KQLGASMHDPWE-TAINFNEEQLQ 687
            .|:..|..|... |.::.:...||
plant   636 GQIPPSFKDMLALTHVDVSHNNLQ 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 6/25 (24%)
LRR_RI 180..>383 CDD:238064 54/204 (26%)
leucine-rich repeat 183..204 CDD:275380 3/20 (15%)
LRR_8 203..263 CDD:290566 15/59 (25%)
leucine-rich repeat 205..228 CDD:275380 7/22 (32%)
leucine-rich repeat 229..252 CDD:275380 6/22 (27%)
LRR_8 252..311 CDD:290566 18/59 (31%)
leucine-rich repeat 253..276 CDD:275380 5/22 (23%)
leucine-rich repeat 277..300 CDD:275380 8/23 (35%)
LRR_8 299..359 CDD:290566 18/60 (30%)
leucine-rich repeat 301..324 CDD:275380 7/22 (32%)
leucine-rich repeat 325..348 CDD:275380 4/22 (18%)
LRR_RI 327..567 CDD:238064 67/272 (25%)
leucine-rich repeat 349..371 CDD:275380 7/22 (32%)
LRR_8 370..425 CDD:290566 15/56 (27%)
leucine-rich repeat 372..393 CDD:275380 6/20 (30%)
leucine-rich repeat 394..415 CDD:275380 6/22 (27%)
leucine-rich repeat 418..486 CDD:275380 19/71 (27%)
leucine-rich repeat 441..464 CDD:275378 7/23 (30%)
LRR_8 487..545 CDD:290566 17/58 (29%)
leucine-rich repeat 487..510 CDD:275380 5/22 (23%)
leucine-rich repeat 511..534 CDD:275380 7/23 (30%)
LRR_8 533..589 CDD:290566 18/59 (31%)
leucine-rich repeat 535..558 CDD:275380 8/22 (36%)
leucine-rich repeat 559..580 CDD:275380 8/21 (38%)
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
AT4G08850NP_849538.2 PLN00113 20..1035 CDD:215061 159/653 (24%)
LRRNT_2 49..91 CDD:285463 9/42 (21%)
leucine-rich repeat 95..111 CDD:275380 4/15 (27%)
leucine-rich repeat 120..143 CDD:275380 3/22 (14%)
leucine-rich repeat 144..167 CDD:275380 7/22 (32%)
leucine-rich repeat 170..191 CDD:275380 5/20 (25%)
leucine-rich repeat 192..215 CDD:275380 5/22 (23%)
leucine-rich repeat 216..239 CDD:275380 8/23 (35%)
leucine-rich repeat 240..263 CDD:275380 7/22 (32%)
leucine-rich repeat 264..287 CDD:275380 4/22 (18%)
leucine-rich repeat 288..311 CDD:275380 7/22 (32%)
leucine-rich repeat 312..335 CDD:275380 6/22 (27%)
leucine-rich repeat 336..359 CDD:275380 6/22 (27%)
leucine-rich repeat 360..383 CDD:275380 5/22 (23%)
leucine-rich repeat 384..404 CDD:275380 5/19 (26%)
leucine-rich repeat 408..429 CDD:275380 6/20 (30%)
leucine-rich repeat 432..503 CDD:275380 12/71 (17%)
leucine-rich repeat 456..477 CDD:275380 5/20 (25%)
LRR_RI <500..>635 CDD:238064 35/140 (25%)
leucine-rich repeat 504..527 CDD:275380 8/22 (36%)
leucine-rich repeat 528..551 CDD:275380 9/23 (39%)
leucine-rich repeat 552..575 CDD:275380 5/22 (23%)
leucine-rich repeat 576..599 CDD:275380 4/27 (15%)
leucine-rich repeat 600..623 CDD:275380 3/22 (14%)
leucine-rich repeat 624..645 CDD:275380 5/20 (25%)
leucine-rich repeat 648..670 CDD:275380 3/12 (25%)
PKc_like 781..1037 CDD:304357
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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