DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and RLP35

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_001319521.1 Gene:RLP35 / 820279 AraportID:AT3G11080 Length:943 Species:Arabidopsis thaliana


Alignment Length:818 Identity:189/818 - (23%)
Similarity:298/818 - (36%) Gaps:203/818 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 HSICERWLQKHCHCTGSLEVLRLSCRGIGILAVPVNLPNEVVVLDLG--------NNNLTKLEAN 197
            |...|.| :.:..|          |...||.....:  .||:.|||.        ::|      :
plant    74 HPTTESW-RNNSDC----------CNWEGITCDTKS--GEVIELDLSCSWLYGSFHSN------S 119

  Fly   198 SFFMAPNLEELTLSDNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGNA 262
            |.|...||..|.|:.|.:....|::...|:.|..|.|.......|.|.|.:.|::||||.|:.|.
plant   120 SLFRLQNLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQ 184

  Fly   263 LVSLDGDCLGHLQKLRTLRLEGNLFY-RIPTNALAGLRTLEALNLGSNLLTIINDEDFPRMPN-- 324
            ........:|:|..|.:|.|..|.|. :|| :::..|..|..|:|.||       :.|.::|:  
plant   185 FSGQIPSSIGNLSHLTSLELSSNQFSGQIP-SSIGNLSNLTFLSLPSN-------DFFGQIPSSI 241

  Fly   325 -----LIVLLLKRNQIMKISAGALKNLTALKVLELDDNLIS-SLPEGLSKLSQLQELSITSNRLR 383
                 |..|.|..|..:.....:..||..|.||::|.|.:| ::|..|..|::|..|.::.|:..
plant   242 GNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQFT 306

  Fly   384 WINDTELPRSMQMLDMRA--NPLSTISPGAFRGMSKLRKLILSDVR---TLRSFPELEACHALEI 443
            ......:.....::|..|  |..:...|.:...:..|.:|.|||.:   ||. |..:.:...|:.
plant   307 GTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDNQLNGTLH-FGNISSPSNLQY 370

  Fly   444 LKLDRAGIQEVPANLCRQTPRLKSLELKTNSLKRIPNLSSCRDLRLLDLS--SNQIEKIQGKPFN 506
            |.:.       ..|.....||         ||.|..||:      |.|||  :.|...:....|:
plant   371 LIIG-------SNNFIGTIPR---------SLSRFVNLT------LFDLSHLNTQCRPVDFSIFS 413

  Fly   507 GLKQLNDLLLSYNRIKALP-QDAFQGIPKLQLLDLEGNEISYIHKEAFSG---FTALEDLNL--- 564
            .||.|:||.|||.....:. .|.......|:.||:.||.:|..:|.:.|.   ..:::.|.|   
plant   414 HLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQSLYLSGC 478

  Fly   565 GNNIFPELPESGLRA---LLHLKTFNNPKLREFPPP--DTFPRIQTLILSYAYHCCAFLPLVA-- 622
            |...|||:    ||.   |..|...|| |::...|.  .|.|.:..|.||..    .|:...:  
plant   479 GITDFPEI----LRTQHELGFLDVSNN-KIKGQVPGWLWTLPNLFYLNLSNN----TFISFESSS 534

  Fly   623 ----MSSQKKTSQVQEAVLFPSDAEF---------------DMTLWNNSMMNIWPQ-MHNLSKQL 667
                :||.:|.|.:.   ||.|:..|               .:.|..|:.....|: |..|...|
plant   535 KKHGLSSVRKPSMIH---LFASNNNFTGKIPSFICGLRSLNTLDLSENNYNGSIPRCMEKLKSTL 596

  Fly   668 GASMHDPWETAINFNEEQLQTQTGGQIATSYMEEYFEEHDVSGPATGYGFGTG-------LFSGM 725
                     ..:|..:..|   :||  ...::.|.....||     |:....|       .||.:
plant   597 ---------FVLNLRQNNL---SGG--LPKHIFESLRSLDV-----GHNLLVGKLPRSLIRFSNL 642

  Fly   726 STEDFQPGSVQCLPMPGPFLPCADLFDWWTLRCGVWVVFLLSLLGNGTVVFVLLCSRSKMDVPRF 790
            ...:.:...:.            |.|.:|                        |.|.||:.|   
plant   643 EVLNVESNRIN------------DTFPFW------------------------LSSLSKLQV--- 668

  Fly   791 LVCNLAAADFFMGIYLGILAIVDAATLGEFRMFAIPWQMSVLCQLSGFLAVLSSELSVYTLAVIT 855
            ||..   ::.|.|       .:..||..|.|:..|        ..:.|...|.:|..|...|:.:
plant   669 LVLR---SNAFHG-------PIHEATFPELRIIDI--------SHNHFNGTLPTEYFVKWSAMSS 715

  Fly   856 LERNYAITHAIHLNKRLSLKQAGYIMSVGWVFALIMAL 893
            |.:|...::..::...|..:.:..:|:.|....|:..|
plant   716 LGKNEDQSNEKYMGSGLYYQDSMVLMNKGLAMELVRIL 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 3/20 (15%)
LRR_RI 180..>383 CDD:238064 63/219 (29%)
leucine-rich repeat 183..204 CDD:275380 6/28 (21%)
LRR_8 203..263 CDD:290566 20/59 (34%)
leucine-rich repeat 205..228 CDD:275380 6/22 (27%)
leucine-rich repeat 229..252 CDD:275380 7/22 (32%)
LRR_8 252..311 CDD:290566 21/59 (36%)
leucine-rich repeat 253..276 CDD:275380 8/22 (36%)
leucine-rich repeat 277..300 CDD:275380 8/23 (35%)
LRR_8 299..359 CDD:290566 18/66 (27%)
leucine-rich repeat 301..324 CDD:275380 6/22 (27%)
leucine-rich repeat 325..348 CDD:275380 6/22 (27%)
LRR_RI 327..567 CDD:238064 65/254 (26%)
leucine-rich repeat 349..371 CDD:275380 9/22 (41%)
LRR_8 370..425 CDD:290566 10/56 (18%)
leucine-rich repeat 372..393 CDD:275380 3/20 (15%)
leucine-rich repeat 394..415 CDD:275380 4/22 (18%)
leucine-rich repeat 418..486 CDD:275380 18/70 (26%)
leucine-rich repeat 441..464 CDD:275378 3/22 (14%)
LRR_8 487..545 CDD:290566 20/60 (33%)
leucine-rich repeat 487..510 CDD:275380 7/24 (29%)
leucine-rich repeat 511..534 CDD:275380 7/23 (30%)
LRR_8 533..589 CDD:290566 19/64 (30%)
leucine-rich repeat 535..558 CDD:275380 8/25 (32%)
leucine-rich repeat 559..580 CDD:275380 8/26 (31%)
7tm_4 764..>892 CDD:304433 25/127 (20%)
7tm_1 770..1017 CDD:278431 26/124 (21%)
RLP35NP_001319521.1 LRRNT_2 39..95 CDD:311940 7/31 (23%)
PLN00113 79..>658 CDD:331614 160/671 (24%)
leucine-rich repeat 103..123 CDD:275380 5/25 (20%)
leucine-rich repeat 127..150 CDD:275380 6/22 (27%)
leucine-rich repeat 151..174 CDD:275380 7/22 (32%)
leucine-rich repeat 175..198 CDD:275380 8/22 (36%)
leucine-rich repeat 199..222 CDD:275380 8/23 (35%)
leucine-rich repeat 223..246 CDD:275380 7/29 (24%)
leucine-rich repeat 247..270 CDD:275380 6/22 (27%)
leucine-rich repeat 271..294 CDD:275380 9/22 (41%)
leucine-rich repeat 295..318 CDD:275380 3/22 (14%)
leucine-rich repeat 319..337 CDD:275380 4/17 (24%)
leucine-rich repeat 343..367 CDD:275380 8/24 (33%)
leucine-rich repeat 368..388 CDD:275380 7/35 (20%)
leucine-rich repeat 392..417 CDD:275380 8/30 (27%)
leucine-rich repeat 443..469 CDD:275380 8/25 (32%)
leucine-rich repeat 470..492 CDD:275380 8/25 (32%)
leucine-rich repeat 493..516 CDD:275380 7/23 (30%)
leucine-rich repeat 517..541 CDD:275380 4/27 (15%)
leucine-rich repeat 542..570 CDD:275380 6/30 (20%)
leucine-rich repeat 571..594 CDD:275380 5/22 (23%)
leucine-rich repeat 596..617 CDD:275380 5/34 (15%)
leucine-rich repeat 618..641 CDD:275380 5/27 (19%)
LRR_8 640..698 CDD:316378 18/114 (16%)
leucine-rich repeat 642..665 CDD:275380 5/58 (9%)
leucine-rich repeat 716..803 CDD:275380 7/38 (18%)
PLN00113 <758..864 CDD:331614
leucine-rich repeat 804..825 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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