DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and SSTR2

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_001041.1 Gene:SSTR2 / 6752 HGNCID:11331 Length:369 Species:Homo sapiens


Alignment Length:282 Identity:63/282 - (22%)
Similarity:127/282 - (45%) Gaps:27/282 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   761 WVVFLLSLLGNGTVVFVLLCSRSKMDVPRFLVCNLAAADFFMGIYLGILAIVDAATLGEFRMFAI 825
            :||.::.|.||..|::|:|.......:....:.|||.||....:.|..||:         ::..:
Human    51 FVVCIIGLCGNTLVIYVILRYAKMKTITNIYILNLAIADELFMLGLPFLAM---------QVALV 106

  Fly   826 PWQM-SVLCQLSGFLAVLSSELSVYTLAVITLERNYAITHAIHLNKRLSLKQAGYIMSVGWVFAL 889
            .|.. ..:|::...:..::...|::.|.|::::|..|:.|.|...|....:.|..|....|..:|
Human   107 HWPFGKAICRVVMTVDGINQFTSIFCLTVMSIDRYLAVVHPIKSAKWRRPRTAKMITMAVWGVSL 171

  Fly   890 --IMALMPLVGV--SDYRKFAVCLPFETTTGPASLTYVISLMFINGCAFLTLMG-CYLKMYWAIR 949
              |:.:|...|:  :.:.:.:..:.:...:|.....::|....:.....||::. |||.:...::
Human   172 LVILPIMIYAGLRSNQWGRSSCTINWPGESGAWYTGFIIYTFILGFLVPLTIICLCYLFIIIKVK 236

  Fly   950 ------GSQAWNTNDSRIAKRMALLVFTDFLCWSPIAFFSITAIFGLQLIS----LEQAKIFTVF 1004
                  ||.....::.::.:.::::|.....||.|...|:::::  ...||    |:....|.|.
Human   237 SSGIRVGSSKRKKSEKKVTRMVSIVVAVFIFCWLPFYIFNVSSV--SMAISPTPALKGMFDFVVV 299

  Fly  1005 VLPLNSCCNPFLYAIMTKQFKK 1026
            :...|||.||.|||.::..|||
Human   300 LTYANSCANPILYAFLSDNFKK 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064
leucine-rich repeat 183..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..311 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
LRR_8 299..359 CDD:290566
leucine-rich repeat 301..324 CDD:275380
leucine-rich repeat 325..348 CDD:275380
LRR_RI 327..567 CDD:238064
leucine-rich repeat 349..371 CDD:275380
LRR_8 370..425 CDD:290566
leucine-rich repeat 372..393 CDD:275380
leucine-rich repeat 394..415 CDD:275380
leucine-rich repeat 418..486 CDD:275380
leucine-rich repeat 441..464 CDD:275378
LRR_8 487..545 CDD:290566
leucine-rich repeat 487..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
LRR_8 533..589 CDD:290566
leucine-rich repeat 535..558 CDD:275380
leucine-rich repeat 559..580 CDD:275380
7tm_4 764..>892 CDD:304433 29/130 (22%)
7tm_1 770..1017 CDD:278431 54/262 (21%)
SSTR2NP_001041.1 7tmA_SSTR2 44..323 CDD:320637 63/282 (22%)
TM helix 1 45..71 CDD:320637 8/19 (42%)
TM helix 2 78..104 CDD:320637 8/34 (24%)
TM helix 3 115..145 CDD:320637 6/29 (21%)
TM helix 4 157..179 CDD:320637 5/21 (24%)
TM helix 5 205..234 CDD:320637 6/28 (21%)
TM helix 6 249..279 CDD:320637 5/29 (17%)
TM helix 7 291..316 CDD:320637 10/24 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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