DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and SLIT3

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_001258875.2 Gene:SLIT3 / 6586 HGNCID:11087 Length:1530 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064
leucine-rich repeat 183..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..311 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
LRR_8 299..359 CDD:290566
leucine-rich repeat 301..324 CDD:275380
leucine-rich repeat 325..348 CDD:275380
LRR_RI 327..567 CDD:238064
leucine-rich repeat 349..371 CDD:275380
LRR_8 370..425 CDD:290566
leucine-rich repeat 372..393 CDD:275380
leucine-rich repeat 394..415 CDD:275380
leucine-rich repeat 418..486 CDD:275380
leucine-rich repeat 441..464 CDD:275378
LRR_8 487..545 CDD:290566
leucine-rich repeat 487..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
LRR_8 533..589 CDD:290566
leucine-rich repeat 535..558 CDD:275380
leucine-rich repeat 559..580 CDD:275380
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
SLIT3NP_001258875.2 LRRNT 33..64 CDD:214470
LRR <62..>220 CDD:227223
LRR 1 62..83
leucine-rich repeat 64..86 CDD:275380
LRR 2 86..107
leucine-rich repeat 87..110 CDD:275380
internalin_A 107..>478 CDD:380193
LRR 3 110..131
leucine-rich repeat 111..134 CDD:275380
LRR 4 134..155
leucine-rich repeat 135..158 CDD:275380
LRR 5 158..179
leucine-rich repeat 159..182 CDD:275380
LRR 6 182..203
leucine-rich repeat 183..206 CDD:275380
leucine-rich repeat 207..308 CDD:275380
LRR 7 308..329
leucine-rich repeat 309..332 CDD:275380
LRR_8 311..367 CDD:338972
LRR 8 332..353
leucine-rich repeat 333..356 CDD:275380
LRR 9 356..377
leucine-rich repeat 357..377 CDD:275380
LRR 10 380..401
leucine-rich repeat 381..404 CDD:275380
LRR 11 404..425
leucine-rich repeat 405..428 CDD:275380
LRRNT 505..535 CDD:214470
LRR 12 533..554
LRR_8 534..593 CDD:338972
leucine-rich repeat 534..558 CDD:275380
LRR 13 558..579
leucine-rich repeat 559..582 CDD:275380
LRR_8 582..641 CDD:338972
LRR 14 582..603
leucine-rich repeat 583..606 CDD:275380
LRR 15 606..627
leucine-rich repeat 607..630 CDD:275380
LRR 16 630..651
leucine-rich repeat 631..654 CDD:275380
PCC 636..>714 CDD:188093
leucine-rich repeat 655..745 CDD:275380
LRRNT 725..756 CDD:214470
LRR <743..>869 CDD:227223
leucine-rich repeat 746..776 CDD:275380
LRR 17 753..775
LRR_8 776..835 CDD:338972
LRR 18 776..797
leucine-rich repeat 777..800 CDD:275380
LRR 19 800..821
leucine-rich repeat 801..824 CDD:275380
LRR 20 824..845
leucine-rich repeat 825..846 CDD:275380
PCC 830..>912 CDD:188093
EGF_CA 963..1001 CDD:238011
EGF_CA 1005..1038 CDD:238011
EGF_CA 1042..1079 CDD:238011
EGF_CA 1081..1117 CDD:238011
EGF 1130..1160 CDD:333761
LamG 1188..1321 CDD:214598
EGF 1379..1407 CDD:333761
GHB_like <1473..1528 CDD:389804
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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