DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and erbin

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_005155633.1 Gene:erbin / 566811 ZFINID:ZDB-GENE-061103-403 Length:1392 Species:Danio rerio


Alignment Length:1337 Identity:260/1337 - (19%)
Similarity:407/1337 - (30%) Gaps:506/1337 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 SCRGIGILAVPVN-LPNE---VVVLDLGNNNLTKLEANSFFMAPNLEELTLSDNSIINMDPNAFY 224
            |.|.:.:..||.. |..|   |..||..:.:|.::....|.....||||.|..|.|..: |...:
Zfish     3 SKRSLFVRLVPCRCLRGEEETVTTLDYSHCSLEQVPKEIFSFEKTLEELYLDANQIEEL-PKQLF 66

  Fly   225 GLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGNALVSLDGDCLGHLQKLRTLRLEGNLFYR 289
            ....|.||||.:..|..|||    |:|.|.:                     ||.|.:..|....
Zfish    67 NCQLLYRLSLPDNDLTVLPP----GIANLIN---------------------LRELDVSKNGIQE 106

  Fly   290 IPTNALAGLRTLEALNLGSNLLTIINDEDFPRMPNLIVLLLKRNQIMKISAGALKNLTALKVLEL 354
            .|.|                                                 :||...|.::|.
Zfish   107 FPEN-------------------------------------------------IKNCKVLAIVEA 122

  Fly   355 DDNLISSLPEGLSKLSQLQELSITSNRLRWINDT---ELPRS------MQMLDMRANPLSTISPG 410
            ..|.||.||||.::|..|.:|        ::||.   .||.|      :|:|::|.|.|..:.  
Zfish   123 SVNPISKLPEGFTQLLSLSQL--------YLNDAFLEFLPASFGRLTKLQILELRENQLKMLP-- 177

  Fly   411 AFRGMSKLRKLILSDVRTLRSFPELEACHALEILKLDRAGIQEVPANLCRQTPRLKSLELKTNSL 475
              :.|.||.:                    ||.|.|......||| .:..|...::.|.:..|.|
Zfish   178 --KSMHKLTQ--------------------LERLDLGSNEFTEVP-EVLEQLTGIRELWMDGNKL 219

  Fly   476 KRIPN-LSSCRDLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQDAFQGIPKLQLLD 539
            ..:|. :.:.:.|..||:|.|.:|.:: :..:|.:.|.|||||.|.:..|| .:...:.||..|.
Zfish   220 TFVPGMIGALKQLSYLDVSKNNVEMVE-EQISGCENLQDLLLSNNALTQLP-GSIGSLKKLSTLK 282

  Fly   540 LEGNEISYIHKEAFSGFTALEDLNLGNNIFPELPESGLRALLHLKTF--NNPKLREFPPPDTFPR 602
            ::.|::.|: .:...|.:.|::|:...|....|| |.:...::|:||  ::..|.:.||      
Zfish   283 VDDNQLMYL-PDTIGGLSHLDELDCSFNEIEALP-SSIGQCVNLRTFAADHNLLAQMPP------ 339

  Fly   603 IQTLILSYAYHCCAFLPLVAMSSQKKTSQVQEAVLFPSDAEFDMTLWNNSMMNIWPQMHNLSKQL 667
                               .|.|.|..:     |||         |.:|.:.|:..:|.::.|..
Zfish   340 -------------------EMGSLKNVT-----VLF---------LHSNKLENLPEEMGDMQKLK 371

  Fly   668 GASMHD------PWE-------TAINFNEEQ------LQ----TQTGGQIATSYM-------EEY 702
            ..::.|      |:.       ||:..:|.|      ||    .:|...:.|:||       |||
Zfish   372 VINLSDNKLRNLPYSFTKLNQMTAMWLSENQSKPLIPLQKEEDPETHKIVLTNYMFPQQTRTEEY 436

  Fly   703 FEEHDVSGPATGYGFGTGLFSGMSTEDFQ---------------------------PGSVQCLPM 740
            ....|      ...|...|:.....:..|                           .|:::..|.
Zfish   437 VPNSD------SESFNPSLWEEQRKQRAQVAFECDEDKDEREMPPRVSSHRPLLSREGNLKRYPT 495

  Fly   741 PGPFLPCADLFDWWTLRCGVWVVFLLSLLGNGTVVFVLLCSRSKMD--------VPRFLVCNLAA 797
            |.|                       ..|.|.......:..|.|.|        .||....|   
Zfish   496 PYP-----------------------DELKNMVKTAQSVAHRLKEDESGDEAGKEPRVSERN--- 534

  Fly   798 ADFFMGIY-LGILAIVDAATLGEFRMFAIPWQMSVLCQLSGFLAVLSSELSVYTLAVITLERNYA 861
               .:|:. :|:..|....|.|:      |.:|.                   ..|.:....||.
Zfish   535 ---HIGVQDVGVKVIESPCTNGK------PAEMD-------------------PKAAMNSNHNYE 571

  Fly   862 ITHAI--HLNKRLSLKQAGYIMSV--------------GWVFALIMALM--PLVGVSDYRKFAVC 908
            ...::  |..:|:.||.:..:.::              .....:.:|.|  ||:.:|..:...|.
Zfish   572 PIDSVDNHSIERIPLKTSDNMRTMVNHDDTLEDSEELSSEEEEMKIAEMRPPLIEISINQPKVVA 636

  Fly   909 LPFETTTGPASLTYVISLMFINGCAFLTLMGCYLKMYWAIRGSQAWNTNDSRIAKRMALLVFTDF 973
            |..:..........::.....|.                       |.|:|.             
Zfish   637 LSKDKKDDGKDADSLLDETVANS-----------------------NQNNSN------------- 665

  Fly   974 LCWSPIAFFSITAIFGLQLISLEQAKIFTVFVLPLNSCCNPFLYAIMTKQFKKDCVTLCKHFEES 1038
             |.||              ..:..:...|......||.|.|                    ..||
Zfish   666 -CSSP--------------SRMSDSVSLTTDSSQDNSLCTP--------------------ERES 695

  Fly  1039 RVVGGGGPGGRGAVARTKRGDLPPPLLPAAAVAHPPGCRCLRMLPSEMPNWHKMEQTPSMWQRLR 1103
            ::                      ||:|...              .|..|.::::|...:.|.  
Zfish   696 KM----------------------PLIPKNG--------------QEDENLNQLKQMTPLLQN-- 722

  Fly  1104 TFCCGENRRRRKQRRQPQQRRQRAYTAAAANPYQYQFA-ELR-------------------QQRQ 1148
              |.|.     :...|...:.|::|.:.:.....|.|: |.|                   .|..
Zfish   723 --CNGS-----ETSLQTILKNQQSYESKSDQMADYSFSMEERLALIEKGINNGVTDQYSKWDQIN 780

  Fly  1149 NRASSISSENFCSSRSSSWRHGPPSSAPVPP-GNCSMPLKMLEPHAHPHGHGRRRHSAWLITRKT 1212
            ...:.:|.:|..:.........||:...:.. .|..:.|:.||       :|.:       .:||
Zfish   781 MNVAKLSPDNMLAYEELERTKSPPAKETMSSNNNARLSLENLE-------NGNQ-------LQKT 831

  Fly  1213 SQDSNLSSSRNDS----SASATTASTSTFRLSRSSAGSST----------PLPSIIAHNGKAQLD 1263
            ....|. :||.|.    ..|..|.||....||..|...||          |.| ::.....|.:|
Zfish   832 QSGENF-NSRTDQVPLRYESVRTVSTGVNALSDMSLSRSTEELSPEKKCPPAP-VVKSQSIANMD 894

  Fly  1264 AVKPRLVRQEAVQEEEDSSPPRLGVRFLPTIPSAADSSVVMEDGDS-ANTGVASFLG------MP 1321
            ....:|      ...|..|||.       .:..|:.:||....|.| ..:..||.|.      .|
Zfish   895 GGGMKL------YSIEGESPPY-------EVACASRTSVAGAQGQSIVRSKSASLLNDQHMQIYP 946

  Fly  1322 LPGASSGFLIAPTTAATTSPPPV--VLQPAKPPPDPN 1356
            ...|||..|:      ::|.|||  ...||.|||..|
Zfish   947 GSSASSSDLL------SSSKPPVSSTRYPAGPPPQYN 977

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 5/15 (33%)
LRR_RI 180..>383 CDD:238064 46/205 (22%)
leucine-rich repeat 183..204 CDD:275380 4/20 (20%)
LRR_8 203..263 CDD:290566 20/59 (34%)
leucine-rich repeat 205..228 CDD:275380 8/22 (36%)
leucine-rich repeat 229..252 CDD:275380 10/22 (45%)
LRR_8 252..311 CDD:290566 7/58 (12%)
leucine-rich repeat 253..276 CDD:275380 1/22 (5%)
leucine-rich repeat 277..300 CDD:275380 6/22 (27%)
LRR_8 299..359 CDD:290566 5/59 (8%)
leucine-rich repeat 301..324 CDD:275380 0/22 (0%)
leucine-rich repeat 325..348 CDD:275380 2/22 (9%)
LRR_RI 327..567 CDD:238064 63/249 (25%)
leucine-rich repeat 349..371 CDD:275380 10/21 (48%)
LRR_8 370..425 CDD:290566 15/63 (24%)
leucine-rich repeat 372..393 CDD:275380 6/23 (26%)
leucine-rich repeat 394..415 CDD:275380 5/20 (25%)
leucine-rich repeat 418..486 CDD:275380 13/68 (19%)
leucine-rich repeat 441..464 CDD:275378 8/22 (36%)
LRR_8 487..545 CDD:290566 20/57 (35%)
leucine-rich repeat 487..510 CDD:275380 7/22 (32%)
leucine-rich repeat 511..534 CDD:275380 9/22 (41%)
LRR_8 533..589 CDD:290566 15/57 (26%)
leucine-rich repeat 535..558 CDD:275380 5/22 (23%)
leucine-rich repeat 559..580 CDD:275380 6/20 (30%)
7tm_4 764..>892 CDD:304433 22/152 (14%)
7tm_1 770..1017 CDD:278431 40/273 (15%)
erbinXP_005155633.1 LRR_RI 8..267 CDD:238064 88/367 (24%)
leucine-rich repeat 24..47 CDD:275380 5/22 (23%)
LRR_8 46..104 CDD:290566 24/83 (29%)
leucine-rich repeat 48..70 CDD:275380 8/22 (36%)
leucine-rich repeat 71..93 CDD:275380 12/25 (48%)
leucine-rich repeat 94..116 CDD:275380 8/70 (11%)
leucine-rich repeat 117..162 CDD:275380 17/52 (33%)
LRR_8 161..219 CDD:290566 18/82 (22%)
leucine-rich repeat 163..185 CDD:275380 8/25 (32%)
LRR_RI 186..401 CDD:238064 61/258 (24%)
leucine-rich repeat 186..208 CDD:275380 8/22 (36%)
leucine-rich repeat 209..231 CDD:275380 4/21 (19%)
LRR_8 230..288 CDD:290566 20/59 (34%)
leucine-rich repeat 232..254 CDD:275380 7/22 (32%)
leucine-rich repeat 255..275 CDD:275380 9/20 (45%)
leucine-rich repeat 278..300 CDD:275380 5/22 (23%)
leucine-rich repeat 301..323 CDD:275380 6/22 (27%)
leucine-rich repeat 324..346 CDD:275380 8/46 (17%)
LRR_8 345..402 CDD:290566 14/70 (20%)
leucine-rich repeat 347..369 CDD:275380 7/35 (20%)
DUF1421 961..>1152 CDD:284607 9/17 (53%)
PDZ_signaling <1331..1387 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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