DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and lrriq1

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_009291864.1 Gene:lrriq1 / 565257 ZFINID:ZDB-GENE-050419-235 Length:1511 Species:Danio rerio


Alignment Length:744 Identity:167/744 - (22%)
Similarity:254/744 - (34%) Gaps:229/744 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 ETKENPAPDMQNSQEQEPYVHLQHLQQQQQQNPQTVQQLSQI------TVNRTSKSASVTPTGIR 94
            |.|:|    |.|:|..|             .|.:.::.|.:.      |:.:..||.|:      
Zfish   475 ENKDN----MLNAQRTE-------------DNNEIIRTLDKTSEGDINTIEKQDKSQSI------ 516

  Fly    95 ENVMLPSADPEKEAQILYEKSLQEYHGSQLSTASTATDVIAGKRTLHSICERWLQKHCHCTGSLE 159
                  :|......||.:.|...:.||.:..|.|......:.|.| ..|....:..|...:..|:
Zfish   517 ------NALDYTRPQINHYKERIKSHGEETETDSNEKPEQSRKMT-KIIAHSHINAHQGLSNDLD 574

  Fly   160 VLRLSCRGIGI-LAVPVNLPNEVVVLDLGNN---NLTKLEANSFFMAPNLEELTLSDNSIINMDP 220
            :.:...:.|.. |.:|.:..| |...::.|:   |.|:.|..::.:.        |..|:....|
Zfish   575 IGQDHAKSINSDLMMPASDLN-VKSTEMENSCYRNTTESETKNYKVQ--------SQESVSACLP 630

  Fly   221 NA--------FYGLAKLKRLSLQNCGLK------------SLPPQS---------FQGLAQLTSL 256
            ::        ........:|||||...:            ||||.|         ...|.|:|::
Zfish   631 DSTEQKRLAWMMSCTPWSKLSLQNKRKEQSKKRKARKRGPSLPPLSEDAILKAGASNSLKQVTTV 695

  Fly   257 QLNGNALVSLDGDCLGHLQKLRTLRLEGNLFYRIPTNALAGLRTLEALNLGSNLLTI------IN 315
            .|......||  ..|....||:||.|.           ..||.:|:.||..|.:..|      |.
Zfish   696 MLEDLPGCSL--STLSECNKLQTLTLR-----------RCGLTSLDGLNQCSQIRYIDVQENSIT 747

  Fly   316 DEDFPRMPNLIVLLLKRNQIMKISAGALKNLTALKVLELDDNLISSLPEGLSKLSQLQELSITSN 380
            ..|...:.:|.:|||.|||:|.|.  .|.....|:.|:|..|.| ||..||..|..|..||:..|
Zfish   748 HVDCEGLSSLQILLLGRNQLMNIH--GLDEAQNLQTLQLSHNNI-SLISGLGALKMLLHLSVDHN 809

  Fly   381 RLRWINDTELPRSMQMLDMRANPLSTISPGAFRGMSKLRKLILSDVRTLRSFPELEACHALEILK 445
            :|                     |||      ||:.::..|:..|.    |:..|.....||...
Zfish   810 QL---------------------LST------RGLKEIYTLLHLDC----SYNYLSHVEGLENCA 843

  Fly   446 LDRAGIQEVPANLCRQTPRLKSLELKTNSLKRIPNLSSCRDLRLLDLSSNQIEKIQGKPFNGLKQ 510
            |                  |.:|:||.|||..:|.|.:...||.|.|..|.|..:          
Zfish   844 L------------------LNTLDLKGNSLTELPVLQNHVLLRDLYLDDNLIPSL---------- 880

  Fly   511 LNDLLLSYNRIKALPQDAFQGIPKLQLLDLEGNEISYIHKEAFSGFTALEDLNLGNNIFPELPES 575
              |.|.||            .:|.||.|.:..|.|:  |........:|:.|::.:|...:|.:.
Zfish   881 --DDLKSY------------WLPLLQNLSVVQNSIT--HLSPLLDLVSLKTLDVSHNCLSDLQDL 929

  Fly   576 GLR-----ALLHLKTFNNPKLREFPPPDTFPRIQTLILSYAYHCCAFLP-LVAMSSQKKTSQVQE 634
            .|.     :|..|....||.|:|       ...::|||.       .:| |:.::::    |:..
Zfish   930 CLNLQECSSLQELSLTVNPLLQE-------NNWRSLILE-------TVPGLIKLNNE----QIAA 976

  Fly   635 AVLFPSDAEFDMTLWNNSMMNIW----------PQMHNLSKQ------LGASMHDPWETAINFNE 683
            |.:.|         |...... |          .|.|:|.:|      ...|.||....||....
Zfish   977 AAVGP---------WKCPEQK-WSFQALCQAQQKQRHSLLQQQKMEISSAPSKHDAQLLAIGHQT 1031

  Fly   684 EQLQTQTGGQIATSYMEEYFEEHDVSGPA 712
            :..:.    .:...|..||.:......||
Zfish  1032 DLFRL----AVEQRYAHEYGDSCVTEDPA 1056

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 4/21 (19%)
LRR_RI 180..>383 CDD:238064 63/240 (26%)
leucine-rich repeat 183..204 CDD:275380 4/23 (17%)
LRR_8 203..263 CDD:290566 17/88 (19%)
leucine-rich repeat 205..228 CDD:275380 3/30 (10%)
leucine-rich repeat 229..252 CDD:275380 11/43 (26%)
LRR_8 252..311 CDD:290566 17/58 (29%)
leucine-rich repeat 253..276 CDD:275380 5/22 (23%)
leucine-rich repeat 277..300 CDD:275380 6/22 (27%)
LRR_8 299..359 CDD:290566 21/65 (32%)
leucine-rich repeat 301..324 CDD:275380 7/28 (25%)
leucine-rich repeat 325..348 CDD:275380 10/22 (45%)
LRR_RI 327..567 CDD:238064 64/239 (27%)
leucine-rich repeat 349..371 CDD:275380 10/21 (48%)
LRR_8 370..425 CDD:290566 11/54 (20%)
leucine-rich repeat 372..393 CDD:275380 5/20 (25%)
leucine-rich repeat 394..415 CDD:275380 4/20 (20%)
leucine-rich repeat 418..486 CDD:275380 16/67 (24%)
leucine-rich repeat 441..464 CDD:275378 3/22 (14%)
LRR_8 487..545 CDD:290566 15/57 (26%)
leucine-rich repeat 487..510 CDD:275380 6/22 (27%)
leucine-rich repeat 511..534 CDD:275380 4/22 (18%)
LRR_8 533..589 CDD:290566 14/60 (23%)
leucine-rich repeat 535..558 CDD:275380 6/22 (27%)
leucine-rich repeat 559..580 CDD:275380 5/25 (20%)
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
lrriq1XP_009291864.1 LRR_RI 713..952 CDD:238064 87/327 (27%)
LRR_8 713..767 CDD:290566 20/64 (31%)
leucine-rich repeat 714..735 CDD:275380 9/31 (29%)
leucine-rich repeat 736..756 CDD:275380 3/19 (16%)
LRR_8 755..811 CDD:290566 24/58 (41%)
leucine-rich repeat 757..778 CDD:275380 10/22 (45%)
leucine-rich repeat 779..800 CDD:275380 10/21 (48%)
leucine-rich repeat 801..822 CDD:275380 10/47 (21%)
leucine-rich repeat 823..844 CDD:275380 6/24 (25%)
leucine-rich repeat 845..866 CDD:275380 9/20 (45%)
LRR_8 867..921 CDD:290566 19/79 (24%)
leucine-rich repeat 867..890 CDD:275380 10/46 (22%)
leucine-rich repeat 891..912 CDD:275380 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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