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Protein Alignment rk and tshr

DIOPT Version :9

Sequence 1:	NP_476702.1	Gene:	rk / 34819	FlyBaseID:	FBgn0003255	Length:	1360	Species:	Drosophila melanogaster
Sequence 2:	NP_001139235.1	Gene:	tshr / 560609	ZFINID:	ZDB-GENE-110524-4	Length:	757	Species:	Danio rerio

Alignment Length:	760	Identity:	254/760 - (33%)
Similarity:	373/760 - (49%)	Gaps:	132/760 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly   310 LLTIINDEDFPRMPNLI-VLLLKRNQIMKISAGALKNLTALKVLELDDNLISSLPEGLSKLSQLQ 373
            :::.::.:..|.:|... ||.|...::.::...|..|:..:..:.|..::.         ||:|:
Zfish    36 VVSCMDVDSIPTLPERTEVLSLHETRLTRVPKDAFANMVNISRIYLSVDIF---------LSRLE 91

  Fly   374 ELSITSNRLRWINDTELPRSMQMLDMRANPLSTISPGAFRGMSKLRKLILSDVRTLRSFPEL--- 435
            ..|..|  ||.:...|:..:.:        |:.|.|.||:.:..|:.|.|.:. .|..||:|
Zfish    92 MHSFHS--LRELTHIEIRNTRK--------LTFIHPEAFKNLPNLQYLGLFNT-GLTIFPDLTKI 145

  Fly   436 EACHALEILKL-DRAGIQEVPANLCRQTPRLKSLELKTNSLKRIPNLSSCRDLRLLDLSSNQIEK 499
            :|.::..||:: |...|.|:||                |:...|.|     ||..|.|.||...|
Zfish   146 QAENSYFILEISDNPYIAEIPA----------------NAFFGITN-----DLLSLRLYSNGFTK 189

  Fly   500 IQGKPFNGLKQLNDLLLSYNR-IKALPQDAFQGIPKLQLLDLEGNEISYIHKEAFSGFTALEDLN 563
            :|...|||.| |:.:.|..|| :..|.:..|.|.....:| |:.:|         ||.|:
Zfish   190 VQPHAFNGTK-LDSVYLHRNRELTRLDEKMFAGTSSGPML-LDVSE---------SGVTS----- 238

  Fly   564 LGNNIFPELPESGLRALLHLKTFNNPKLREFPPPDTFPRIQTLILSYAYHCCAFLPLVAMSSQKK 628
                    ||..||.:|..|...|...|::.||..||..:.|..|:|..|||||..|     :||
Zfish   239 --------LPARGLDSLRELCARNVWALKKLPPIKTFRHLVTADLTYPSHCCAFKNL-----KKK 290

  Fly   629 TSQVQEAVLFPSDAEFDMTLWNNSMMNIWPQMHNLSKQ---------LGASMHDPWETAINFNEE 684
            ...::|.:                 .|:..:.:.:.|:         |..||    |..|:.::.
Zfish   291 RGFIEEII-----------------CNLTARKNQVQKRSVRAFTIHGLQGSM----EPGIDLSDN 334

  Fly   685 QLQTQTGGQ--IATSYMEEYFEEHDVSGPATGYGFGTGLFSGM--------STEDF---QPG-SV 735
            ..:.....|  ....:...||:.|    .....|||..|.:..        |..|:   :.| .|
Zfish   335 LFRDTYDHQEFFGNGHYPTYFDRH----ADENMGFGETLKNPQEDTSREFDSRYDYIVCEKGEEV 395

  Fly   736 QCLPMPGPFLPCADLFDWWTLRCGVWVVFLLSLLGNGTVVFVLLCSRSKMDVPRFLVCNLAAADF 800
            .|.|.|..|.||.|:..:..||..||.|.||::|||..|:.|||.|..|:.|.|||:|:||.||.
Zfish   396 ACFPAPDEFNPCEDIMGFSFLRVSVWFVSLLAVLGNLLVLLVLLTSHYKLSVSRFLMCHLAVADL 460

  Fly   801 FMGIYLGILAIVDAATLGEFRMFAIPWQMSVLCQLSGFLAVLSSELSVYTLAVITLERNYAITHA 865
            .|||||.::|.||..|..|:...||.||....|.|:||.:|.:||||||||..|||||.||||:|
Zfish   461 CMGIYLLLIASVDLHTQSEYYNHAIDWQTGPGCSLAGFFSVFASELSVYTLTTITLERWYAITYA 525

  Fly   866 IHLNKRLSLKQAGYIMSVGWVFALIMALMPLVGVSDYRKFAVCLPFETTTGPASLTYVISLMFIN 930
            :.|:::|.|..|..||.:||:|.|::.||||||||.|:|.::|||.:|.| .....|:|.::.:|
Zfish   526 MRLDRKLRLSHASVIMLIGWIFCLLLGLMPLVGVSSYQKVSICLPMDTQT-LVDQIYIICVLVLN 589

  Fly   931 GCAFLTLMGCYLKMYWAIRGSQAWNTN-DSRIAKRMALLVFTDFLCWSPIAFFSITAIFGLQLIS 994
            ..||:.:..||:|:|.|:......::| |:.||||||:|:||||||.:||:.:::||:....||:
Zfish   590 ILAFIVICVCYIKIYCAVHNPSHQSSNKDTNIAKRMAVLIFTDFLCMAPISLYAMTAVLDHPLIT 654

  Fly   995 LEQAKIFTVFVLPLNSCCNPFLYAIMTKQFKKDC------VTLCK 1033
            :..:||..|...|||||.|||||||.||.|:.|.      |.||:
Zfish   655 VSNSKILLVLFYPLNSCANPFLYAIFTKAFQGDVFILLSKVGLCQ 699

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.