DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and rxfp2l

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_001919542.3 Gene:rxfp2l / 558546 ZFINID:ZDB-GENE-060531-8 Length:692 Species:Danio rerio


Alignment Length:884 Identity:209/884 - (23%)
Similarity:323/884 - (36%) Gaps:254/884 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 LEANSFFMAPNLEELTLSDNSIINMDPNAFYGLAKLKRLSL-----QNC-GLKSLP--------- 243
            |.:.||.:|      .|||:|..:|.|   .|......||:     |:| |.:..|         
Zfish     7 LSSLSFSLA------FLSDSSGSDMCP---LGQFPCGNLSVCLPQPQHCNGQQDCPNGADEENCV 62

  Fly   244 -----PQSFQGLAQLTSLQLNGNALVSLDGD---CLGHLQKLRTLRLEGNLFYRIPTNALAGLRT 300
                 |..|....: |.:|.:...::.:..|   |.|     |.:...|.....:|    |....
Zfish    63 DNSGWPHLFDAFMK-TRVQESKECMLDVYPDTCHCEG-----RKVNCNGKNLLHVP----AVSSN 117

  Fly   301 LEALNLGSNLLTIINDEDFPRMPNLIVLLLKRNQIMKISAGALKNLTALKVLELDDNLISSLPEG 365
            :.||.|.||.:..::.:.|.|..:|..|.|:.|.|..||..|...|.||:.|.|..|.||||..|
Zfish   118 VTALELNSNRIESLSRDLFIRYRHLERLHLESNSIETISKRAFSGLVALRKLFLSQNKISSLKAG 182

  Fly   366 L-SKLSQLQELSITSNRLRWINDTELPRSMQMLDMRANPLSTISPGAFRGMSKLRKLILSDVRTL 429
            : |.||.|:.|.:..||                      :|::...:|.|:..|..|.|.: .::
Zfish   183 IFSDLSSLEWLILDENR----------------------ISSLRQKSFEGLKSLFFLSLLN-NSV 224

  Fly   430 RSFPELEACHALEILKLDRAGIQEVPANLCRQTPRLKSLELKTNSLKRI--PNLSSCRDLRLLDL 492
            ..||:...||                     :.|||..||::.|.:..:  .:..:|..|.:|.|
Zfish   225 EQFPKTSICH---------------------EMPRLNWLEMEGNIISSLWASSFKNCSSLTVLAL 268

  Fly   493 SSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQDAFQGIPKLQLLDLEGNEISYIHKEAFSGFT 557
            ..|:|..|:...|..:::|.||.:|.|:||.||...||.:..|:.|::..|.:..|:...|....
Zfish   269 RRNRISTIEEGTFADMQRLIDLDVSVNQIKDLPPSLFQNLQNLKQLNISNNPLVNIYSNQFDSLV 333

  Fly   558 ALEDLNLGNNIFPELPESGLRALLHLKTFNNPKLREFPPPDTFPRIQTLILSYAYHCCAFLPLVA 622
            .|:.|::..   .|:|...:|                                     .|.||  
Zfish   334 NLQSLSMEE---VEIPNISIR-------------------------------------MFRPL-- 356

  Fly   623 MSSQKKTSQVQEAVLFPSDAEFDMTLWNNSMMNIWPQMHNLSKQLGASMHDPWETAINFNEEQLQ 687
                                                                             
Zfish   357 ----------------------------------------------------------------- 356

  Fly   688 TQTGGQIATSYMEEYFEEHDVSGPATGYGFGTGLFSGMSTEDFQPGSVQCLPMPGPFLPCADLFD 752
                    |:....||:..:..|                   :.|....|.|.........:|..
Zfish   357 --------TNLTHIYFKRFEFCG-------------------YSPNVRSCKPNTDGISSFENLLA 394

  Fly   753 WWTLRCGVWVVFLLSLLGNGTVVFVLLCSRSKMDVPRFLVCNLAAADFFMGIYLGILAIVDAATL 817
            ...||..||||..:...||..|:.:..|..|:.......:.:|..||..||:||..:...|....
Zfish   395 NIILRVFVWVVAFIICFGNIFVICLRSCIASENQHHTMAIKSLCCADCLMGVYLLFIGAFDIKYC 459

  Fly   818 GEFRMFAIPWQMSVLCQLSGFLAVLSSELSVYTLAVITLERNYAITHAIHLNKRLSLKQAGYIMS 882
            ||:...|..|..|:.|||.|.||:||:|:||..|..:|||:...|..... :.|...||....::
Zfish   460 GEYNRHAQIWMESLSCQLIGSLAMLSTEVSVMMLTYMTLEKYLCIVFPFQ-HYRAGRKQTLCSLT 523

  Fly   883 VGWVFALIMALMPLVGVSDYRKF----AVCLPF--ETTTGPASLTYVISLMF-INGCAFLTLMGC 940
            ..|:...|:|::|......:..|    .||.|.  :.|..|.:..|..::.. :|..||:.::..
Zfish   524 FIWLLGFIIAVIPFWDKQTFGNFYGRNGVCFPLHSDQTEKPGARCYSTAIFLGLNLLAFVMIVFS 588

  Fly   941 YLKMYWAIR-----GSQAWNTNDSRIAKRMALLVFTDFLCWSPIAFFSITAIFGLQLISLEQAKI 1000
            |..|:::::     ..|.....:..||||...:||||.|||.|        ||.|:::||.:.:|
Zfish   589 YSSMFYSVQKTAKTARQTVYDREVTIAKRFFFIVFTDALCWIP--------IFLLKILSLLRVQI 645

  Fly  1001 -------FTVFVLPLNSCCNPFLYAIMTKQFK---KDCV 1029
                   ..:|:||:||..||.||.|.|..|:   |.|:
Zfish   646 AGTIILWVVIFILPINSALNPILYTITTSAFQQRLKQCL 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064 61/212 (29%)
leucine-rich repeat 183..204 CDD:275380 4/9 (44%)
LRR_8 203..263 CDD:290566 17/79 (22%)
leucine-rich repeat 205..228 CDD:275380 7/22 (32%)
leucine-rich repeat 229..252 CDD:275380 8/42 (19%)
LRR_8 252..311 CDD:290566 14/61 (23%)
leucine-rich repeat 253..276 CDD:275380 5/25 (20%)
leucine-rich repeat 277..300 CDD:275380 4/22 (18%)
LRR_8 299..359 CDD:290566 21/59 (36%)
leucine-rich repeat 301..324 CDD:275380 7/22 (32%)
leucine-rich repeat 325..348 CDD:275380 9/22 (41%)
LRR_RI 327..567 CDD:238064 67/242 (28%)
leucine-rich repeat 349..371 CDD:275380 11/22 (50%)
LRR_8 370..425 CDD:290566 11/54 (20%)
leucine-rich repeat 372..393 CDD:275380 4/20 (20%)
leucine-rich repeat 394..415 CDD:275380 2/20 (10%)
leucine-rich repeat 418..486 CDD:275380 14/69 (20%)
leucine-rich repeat 441..464 CDD:275378 0/22 (0%)
LRR_8 487..545 CDD:290566 21/57 (37%)
leucine-rich repeat 487..510 CDD:275380 7/22 (32%)
leucine-rich repeat 511..534 CDD:275380 11/22 (50%)
LRR_8 533..589 CDD:290566 10/55 (18%)
leucine-rich repeat 535..558 CDD:275380 5/22 (23%)
leucine-rich repeat 559..580 CDD:275380 5/20 (25%)
7tm_4 764..>892 CDD:304433 39/127 (31%)
7tm_1 770..1017 CDD:278431 79/265 (30%)
rxfp2lXP_001919542.3 LDLa 26..61 CDD:238060 8/37 (22%)
LRR_8 116..176 CDD:290566 21/59 (36%)
leucine-rich repeat 118..141 CDD:275380 7/22 (32%)
LRR_RI 138..>321 CDD:238064 65/226 (29%)
leucine-rich repeat 142..165 CDD:275380 9/22 (41%)
leucine-rich repeat 166..189 CDD:275380 11/22 (50%)
LRR_8 188..273 CDD:290566 26/128 (20%)
leucine-rich repeat 190..213 CDD:275380 7/44 (16%)
leucine-rich repeat 214..238 CDD:275380 7/45 (16%)
leucine-rich repeat 239..262 CDD:275380 5/22 (23%)
LRR_8 261..321 CDD:290566 21/59 (36%)
leucine-rich repeat 263..286 CDD:275380 7/22 (32%)
LRR_4 285..324 CDD:289563 14/38 (37%)
leucine-rich repeat 287..310 CDD:275380 11/22 (50%)
LRR_8 310..363 CDD:290566 14/167 (8%)
leucine-rich repeat 311..334 CDD:275380 5/22 (23%)
leucine-rich repeat 335..356 CDD:275380 6/60 (10%)
7tm_1 412..669 CDD:278431 79/265 (30%)
7tm_4 <496..668 CDD:304433 49/180 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2087
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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