DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and CD180

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_005573.2 Gene:CD180 / 4064 HGNCID:6726 Length:661 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064
leucine-rich repeat 183..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..311 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
LRR_8 299..359 CDD:290566
leucine-rich repeat 301..324 CDD:275380
leucine-rich repeat 325..348 CDD:275380
LRR_RI 327..567 CDD:238064
leucine-rich repeat 349..371 CDD:275380
LRR_8 370..425 CDD:290566
leucine-rich repeat 372..393 CDD:275380
leucine-rich repeat 394..415 CDD:275380
leucine-rich repeat 418..486 CDD:275380
leucine-rich repeat 441..464 CDD:275378
LRR_8 487..545 CDD:290566
leucine-rich repeat 487..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
LRR_8 533..589 CDD:290566
leucine-rich repeat 535..558 CDD:275380
leucine-rich repeat 559..580 CDD:275380
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
CD180NP_005573.2 leucine-rich repeat 38..57 CDD:275380
LRR 1 54..75
leucine-rich repeat 58..78 CDD:275380
LRR 2 78..99
leucine-rich repeat 79..102 CDD:275380
LRR_8 102..161 CDD:290566
LRR 3 102..123
leucine-rich repeat 103..126 CDD:275380
LRR 4 126..147
leucine-rich repeat 127..150 CDD:275380
LRR 5 150..171
leucine-rich repeat 151..174 CDD:275380
LRR 6 174..195
leucine-rich repeat 175..195 CDD:275380
leucine-rich repeat 196..234 CDD:275380
LRR 7 201..221
leucine-rich repeat 235..275 CDD:275380
LRR 8 275..296
leucine-rich repeat 276..299 CDD:275380
LRR 9 299..320
leucine-rich repeat 300..322 CDD:275380
LRR 10 322..343
LRR_8 323..382 CDD:290566
leucine-rich repeat 323..371 CDD:275380
LRR_RI 327..541 CDD:238064
LRR 11 346..366
LRR_8 371..432 CDD:290566
LRR 12 371..391
leucine-rich repeat 372..397 CDD:275380
LRR 13 397..418
leucine-rich repeat 398..421 CDD:275380
LRR_8 420..481 CDD:290566
LRR 14 421..442
leucine-rich repeat 422..446 CDD:275380
LRR 15 446..466
leucine-rich repeat 447..470 CDD:275380
LRR 16 470..493
leucine-rich repeat 471..497 CDD:275380
LRR_8 497..555 CDD:290566
LRR 17 497..518
leucine-rich repeat 498..521 CDD:275380
LRR 18 521..544
leucine-rich repeat 522..543 CDD:275380
LRR 19 546..564
TPKR_C2 577..626 CDD:301599
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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