DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and tlr22

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_001122147.2 Gene:tlr22 / 403135 ZFINID:ZDB-GENE-040220-5 Length:955 Species:Danio rerio


Alignment Length:988 Identity:209/988 - (21%)
Similarity:348/988 - (35%) Gaps:271/988 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 SICERWLQKHCHCTGSLEVL----RLSCRGIGILAVPVNLPNEVVVLDLGNNNLTKLEANSFFMA 202
            |.|..:...:|..:.|.:.:    ::.|..:....:| .:||...:||:..|:..:::.....:.
Zfish    26 SPCSTFSLTNCTISSSQKDIKTQPKVLCYKMNFFTIP-RVPNNTWILDISFNSFAQIQIEDLNIL 89

  Fly   203 PNLEELTLSDNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGNALVSLD 267
            .||:.|.:|:|.|..:...||..|..|..|:|.:..|.::.....:||..|..|:|:.|.:..:.
Zfish    90 LNLQYLNVSNNKISKIQDGAFGSLFNLTDLNLASNRLNAVSNGMLRGLTNLLVLRLDRNYISVIK 154

  Fly   268 GDCLGHLQKLRTLRLEGNLFYRIP--TNALAGLRTLEALNLGSNLLTIINDED------------ 318
            ......|..|:.|.|..|....|.  ...||.| .||.|.:|||...:.|..:            
Zfish   155 ESAFSTLHSLQVLNLSKNHLRHIDDVKPVLASL-YLEELYIGSNYFNVFNSSELSTKPLSLKRLD 218

  Fly   319 ---------------FPRMPNLIVLLLKRNQIMKISAGALKNLTALKVL---------ELDDNLI 359
                           ||.:.:|.:.....|..|..:......|.::|.|         :..||::
Zfish   219 LSNNRFAAFQLTNNIFPTLNHLDLSYCGHNGTMAWNVTEKSYLASVKTLYFMDVNMSIQTADNVL 283

  Fly   360 SSLPEGLSKLS-----QLQE----LSITSNRLRWIN--DTELPR----------SMQMLDMRANP 403
            .|....|:|:.     :|.:    ||:.|..||.:.  .|::..          .:..||:..|.
Zfish   284 QSFNNTLNKIRLNGNVRLNKTSLLLSVCSPMLRVLRLIATKIKHLTNHMFDPCSELSELDLGGNE 348

  Fly   404 LSTISPGAFRGMSKLRKLILSDVRTLRSFPELEACHALEILKLDRAGIQEVPANLCRQTPRLKSL 468
            :|.:|...|||..:|:||.|...:..|.....:...:||.:.|.|..|.::..|......::|:|
Zfish   349 ISNLSQSMFRGFKQLKKLQLQINKLTRVTNSFQILTSLEFIDLSRNHIHKLSCNDFANLTQVKTL 413

  Fly   469 ELKTNSLKRIPNLSSC-----RDLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQDA 528
            .|.:|   :|.::.||     :.|.:|.|.:|.:.||.....||...|.:|.||||::..:....
Zfish   414 YLYSN---KISSIRSCLFKDLKSLEVLRLGTNNLLKIDDVFSNGPYFLKELQLSYNKLSLIKSHT 475

  Fly   529 FQGIPKLQLLDLEGNEISYIHKEAFSGFTALEDLNLGNNIFPELPESGLRALLHLKTFNNPKLRE 593
            |..:|:|..|.||.|:||.|...||.|...|..|.|.:|..     :|.....|...|:.     
Zfish   476 FGNLPQLNNLSLEDNQISEIEGYAFGGLENLTSLFLSSNKI-----TGKTLTTHPNVFSG----- 530

  Fly   594 FPPPDTFPRIQTLIL-----SYAYHCCAFLPLVAMSSQKKTSQVQEAVLF---------PSD--- 641
                  .|.:|.|.|     |:||....: ||.     |....::|..|:         ||:   
Zfish   531 ------MPNLQNLDLFANSISFAYDKLKY-PLF-----KDLKNLRELSLYSQRRGIGQLPSNLLE 583

  Fly   642 ----------AEFDMTLWNNSMMNIWPQMHNLSKQLGASMHD---PWE----------------- 676
                      ...::...|.::.|..||:..|.....|...|   |.|                 
Zfish   584 GLSSLQMFYIGNTNLNQLNPNLFNFTPQLWFLDLSKNALREDDAIPPELFHPIPNLTKLIISRTQ 648

  Fly   677 -TAINF----NEEQLQT-QTGGQIATSYMEEYFEEHDVSGPATGYGFGTGLFSGMSTEDFQPGSV 735
             .::||    |..:|.| :..|....|..|...:.                ...::..|.|..:.
Zfish   649 LRSLNFLLGANLNKLSTLRASGNEIDSVNETLIKS----------------LPRLAVLDLQNNTF 697

  Fly   736 QCLPMPGPFLPCADLF--DWWTLRCGVWVVFLLSLLGNGTVVFVLLCSRSKMDVPRFLVCNLAAA 798
            .|        .|.:.|  ||             :.....|.|:.|  ||.....||.|       
Zfish   698 TC--------DCNNAFFIDW-------------AKKNESTQVYYL--SRYTCSYPRTL------- 732

  Fly   799 DFFMGIYLGILAIVDAATLGEFRMFAIPWQMSVLCQL-SGFLAVLSSELS----------VYTLA 852
                          ...:|.||...:..:....:|.: |..|.:|:..||          |||. 
Zfish   733 --------------RGTSLAEFNTDSCTFNWDYICFVCSSILVILTLLLSFIWNFLRYQVVYTY- 782

  Fly   853 VITLERNYAITHAIHLNKRLSLKQAGY-----------IMSVGWVFALIMALMP-LVGVSDYRKF 905
                   |.....::.::|   .|:|.           .:...||   :..|:| |.|...:|  
Zfish   783 -------YLFLAFLYDSRR---NQSGQTFQYDAFISYNTLDEAWV---MEELIPKLEGEQGWR-- 832

  Fly   906 AVCL---PFETTTGPASLTYVISLMFINGCAFLTLMGCYLKMYWAIRGSQAWNTNDSRIA----- 962
             :||   .||  .|...:..::..::.:......:...|||..|.        :::.::|     
Zfish   833 -LCLHHRDFE--PGRPIIDNIVDGIYSSRKTICLITRNYLKSNWC--------SSEVQVASFRLF 886

  Fly   963 ---KRMALLVFTD 972
               |.:.:|||.:
Zfish   887 DEQKDVLILVFLE 899

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 2/24 (8%)
LRR_RI 180..>383 CDD:238064 55/249 (22%)
leucine-rich repeat 183..204 CDD:275380 3/20 (15%)
LRR_8 203..263 CDD:290566 19/59 (32%)
leucine-rich repeat 205..228 CDD:275380 8/22 (36%)
leucine-rich repeat 229..252 CDD:275380 6/22 (27%)
LRR_8 252..311 CDD:290566 19/60 (32%)
leucine-rich repeat 253..276 CDD:275380 5/22 (23%)
leucine-rich repeat 277..300 CDD:275380 8/24 (33%)
LRR_8 299..359 CDD:290566 17/95 (18%)
leucine-rich repeat 301..324 CDD:275380 9/49 (18%)
leucine-rich repeat 325..348 CDD:275380 4/22 (18%)
LRR_RI 327..567 CDD:238064 73/274 (27%)
leucine-rich repeat 349..371 CDD:275380 7/35 (20%)
LRR_8 370..425 CDD:290566 19/75 (25%)
leucine-rich repeat 372..393 CDD:275380 7/36 (19%)
leucine-rich repeat 394..415 CDD:275380 7/20 (35%)
leucine-rich repeat 418..486 CDD:275380 18/72 (25%)
leucine-rich repeat 441..464 CDD:275378 6/22 (27%)
LRR_8 487..545 CDD:290566 21/57 (37%)
leucine-rich repeat 487..510 CDD:275380 8/22 (36%)
leucine-rich repeat 511..534 CDD:275380 7/22 (32%)
LRR_8 533..589 CDD:290566 19/55 (35%)
leucine-rich repeat 535..558 CDD:275380 11/22 (50%)
leucine-rich repeat 559..580 CDD:275380 5/20 (25%)
7tm_4 764..>892 CDD:304433 26/149 (17%)
7tm_1 770..1017 CDD:278431 45/237 (19%)
tlr22NP_001122147.2 leucine-rich repeat 458..481 CDD:275380 7/22 (32%)
LRR_RI 461..700 CDD:238064 59/284 (21%)
LRR_8 480..544 CDD:290566 23/79 (29%)
leucine-rich repeat 482..505 CDD:275380 11/22 (50%)
leucine-rich repeat 506..533 CDD:275380 7/42 (17%)
leucine-rich repeat 534..561 CDD:275380 9/32 (28%)
LRR_8 560..622 CDD:290566 9/61 (15%)
leucine-rich repeat 562..587 CDD:275380 4/24 (17%)
leucine-rich repeat 588..606 CDD:275380 1/17 (6%)
leucine-rich repeat 612..638 CDD:275380 5/25 (20%)
LRR_8 637..695 CDD:290566 10/73 (14%)
leucine-rich repeat 639..662 CDD:275380 3/22 (14%)
leucine-rich repeat 663..686 CDD:275380 5/38 (13%)
leucine-rich repeat 687..705 CDD:275380 4/25 (16%)
TIR 802..945 CDD:214587 21/114 (18%)
leucine-rich repeat 71..91 CDD:275380 3/19 (16%)
LRR_8 91..150 CDD:290566 19/58 (33%)
leucine-rich repeat 92..115 CDD:275380 8/22 (36%)
leucine-rich repeat 116..139 CDD:275380 6/22 (27%)
LRR_8 138..199 CDD:290566 19/61 (31%)
leucine-rich repeat 140..163 CDD:275380 5/22 (23%)
leucine-rich repeat 164..213 CDD:275380 15/49 (31%)
leucine-rich repeat 214..338 CDD:275380 20/123 (16%)
LRR_8 337..396 CDD:290566 17/58 (29%)
leucine-rich repeat 339..362 CDD:275380 8/22 (36%)
LRR_RI <363..494 CDD:238064 40/133 (30%)
leucine-rich repeat 363..385 CDD:275380 5/21 (24%)
LRR_8 384..444 CDD:290566 17/62 (27%)
leucine-rich repeat 386..409 CDD:275380 6/22 (27%)
leucine-rich repeat 410..433 CDD:275380 7/25 (28%)
LRR_8 432..492 CDD:290566 21/59 (36%)
leucine-rich repeat 434..457 CDD:275380 8/22 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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