DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and tlr18

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_001082819.1 Gene:tlr18 / 403133 ZFINID:ZDB-GENE-040220-2 Length:854 Species:Danio rerio


Alignment Length:774 Identity:152/774 - (19%)
Similarity:284/774 - (36%) Gaps:221/774 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 KHC----HCTGSLEVLRLSCRGIGILAVP-VNLPNEVVVLDLGNNNLTKLEANSFFMAPNLEELT 209
            ||.    .||.:.:.|...|:|:.:.:|| ..||:.:..|||..|.:..:....|.....|..|.
Zfish    18 KHAKAKQSCTIAFDKLSADCKGLRLDSVPTTQLPDSLEELDLSFNTIHVIRKQDFVKLTYLRVLK 82

  Fly   210 LSDNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGN--ALVSLDGDCLG 272
            |:.|:|..:..:||.|...|:.|:|.|..|..:|.::.:.|..|..|:::.|  :..|| |....
Zfish    83 LNFNNISLVLDDAFQGNLLLEELNLFNNSLTEIPFKALEPLTNLKVLEMSNNLYSQASL-GAAFL 146

  Fly   273 HLQKLRTLRLEGNLFYRIPTNALAGLRTLE----ALNLGS-----------NLLT--IINDEDFP 320
            :..:|:.|.:.|.|...:.:..:..|:.:.    |:..|:           :|.|  :..|..|.
Zfish   147 NFNQLKVLSIGGPLVSSLGSRDIYVLKNISLDKFAVKTGTGFRDYEPGYFKSLSTKHLWFDIAFD 211

  Fly   321 RMPNLIVLLLK------------RN----------------------------------QIMKIS 339
            :.|:|:..:||            ||                                  ::|:: 
Zfish   212 KNPDLLPKMLKDLANKTFDVLRFRNLFEFQYYTGKRDIFYGLQYVNAQTLTFYRGKFNEEVMRM- 275

  Fly   340 AGALKN--LTALKVLELDDNLISSLPEGLSKLSQLQELSITSNRLRWINDTELPRSMQMLDMRAN 402
              ||||  ::.:|.|||                .|.:.:.:.||.:..:...|.....:|...:|
Zfish   276 --ALKNVEISPIKALEL----------------LLIDFARSQNRTQGSSVKNLSLDRLVLSDISN 322

  Fly   403 PLSTISPGAFRGMSKLRKLILSDVR----TLRSFPELEACHALEIL------------------- 444
            |.......:|..::.:||.|:.:|.    ...|:||:::...|:|.                   
Zfish   323 PDIMRFDWSFTWLNHVRKFIVWNVNFNSVPCDSWPEMKSVELLDISNNQLLDSYIYNPLCDTRNT 387

  Fly   445 --KLDRAGIQEVP-------ANLCRQTPRLKSLELKTNSLKRIPNLSSC---------------- 484
              |||...:....       |:|.:...:|.::::..|.|:.:.| .:|                
Zfish   388 LHKLDTFNVSHNRLTSLSDLASLTKDFVKLTTIDMSHNQLQYLGN-GACDWRKTITKVIGNHNSL 451

  Fly   485 ---------RDLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALP---QDAFQGIPKLQL 537
                     ..:..||||.:.::::....||...:|.:||||.|:||.:|   ::.:     |:.
Zfish   452 TSDSFKCLPTSVNFLDLSYSSLDQLDMDYFNKASELTELLLSGNKIKFIPSGWKNRY-----LRT 511

  Fly   538 LDLEGNEISYIHKEAFSGFTALEDLNLGNN-------IFPELPESGLRALLHLKTF-NNPKLREF 594
            |.|:||....:..::|....:|..|..|||       ::..:.|:..:..:.:..: ||.|... 
Zfish   512 LALDGNSFGLVSMKSFKDMLSLRVLTAGNNPYHCTCDLYTFIQETTSKGKVTITDWPNNYKCYH- 575

  Fly   595 PPPDTFPRIQTLILSYA-YHCCAFLPLVAMSSQKKTSQVQEAVLFPSDAEFDMTLWNNSMMNIWP 658
              |:..  :.|::..|: .|....:.||.:.|...|:.|...::.                    
Zfish   576 --PERL--LNTMVSKYSPGHLACDITLVIIISVSTTAAVVLVIML-------------------- 616

  Fly   659 QMHNLSKQLGASMHDPWETAINFNEEQLQTQTGGQIATSYMEEYFEEHDVSGPATGYGFGTGLFS 723
                    |....|.||.....:           ||..:   :|....:..|....|.|...:..
Zfish   617 --------LCYIFHVPWYVKATY-----------QIIRA---KYRAHKEGLGQGVDYAFHAFISY 659

  Fly   724 GMSTEDF-QPGSVQCLP-MPGPFLPCADLFDWWTLRCGVWVV--FLLSLLGNGTVVFVL 778
            ..|..|: :...:.||. :..|:..|....|:..   |.|::  .:.::..:..|:|||
Zfish   660 SHSDADWVRNHLLPCLENVKPPYRLCIHERDFIP---GKWIIDNIIENIENSRKVIFVL 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 6/21 (29%)
LRR_RI 180..>383 CDD:238064 55/269 (20%)
leucine-rich repeat 183..204 CDD:275380 5/20 (25%)
LRR_8 203..263 CDD:290566 18/61 (30%)
leucine-rich repeat 205..228 CDD:275380 8/22 (36%)
leucine-rich repeat 229..252 CDD:275380 7/22 (32%)
LRR_8 252..311 CDD:290566 13/75 (17%)
leucine-rich repeat 253..276 CDD:275380 6/24 (25%)
leucine-rich repeat 277..300 CDD:275380 5/22 (23%)
LRR_8 299..359 CDD:290566 21/124 (17%)
leucine-rich repeat 301..324 CDD:275380 6/39 (15%)
leucine-rich repeat 325..348 CDD:275380 10/70 (14%)
LRR_RI 327..567 CDD:238064 64/347 (18%)
leucine-rich repeat 349..371 CDD:275380 4/21 (19%)
LRR_8 370..425 CDD:290566 11/54 (20%)
leucine-rich repeat 372..393 CDD:275380 4/20 (20%)
leucine-rich repeat 394..415 CDD:275380 4/20 (20%)
leucine-rich repeat 418..486 CDD:275380 19/124 (15%)
leucine-rich repeat 441..464 CDD:275378 7/50 (14%)
LRR_8 487..545 CDD:290566 20/60 (33%)
leucine-rich repeat 487..510 CDD:275380 6/22 (27%)
leucine-rich repeat 511..534 CDD:275380 9/25 (36%)
LRR_8 533..589 CDD:290566 13/63 (21%)
leucine-rich repeat 535..558 CDD:275380 6/22 (27%)
leucine-rich repeat 559..580 CDD:275380 6/27 (22%)
7tm_4 764..>892 CDD:304433 4/15 (27%)
7tm_1 770..1017 CDD:278431 4/9 (44%)
tlr18NP_001082819.1 LRR_8 53..>98 CDD:316378 12/44 (27%)
leucine-rich repeat 54..77 CDD:275380 5/22 (23%)
leucine-rich repeat 78..101 CDD:275380 8/22 (36%)
leucine-rich repeat 102..125 CDD:275380 7/22 (32%)
leucine-rich repeat 126..150 CDD:275380 6/24 (25%)
LRR <345..>519 CDD:227223 36/179 (20%)
leucine-rich repeat 362..390 CDD:275380 2/27 (7%)
leucine-rich repeat 391..416 CDD:275380 4/24 (17%)
leucine-rich repeat 417..440 CDD:275380 5/23 (22%)
leucine-rich repeat 441..462 CDD:275380 0/20 (0%)
leucine-rich repeat 463..486 CDD:275380 6/22 (27%)
leucine-rich repeat 487..508 CDD:275380 9/20 (45%)
leucine-rich repeat 509..532 CDD:275380 6/22 (27%)
TIR 653..791 CDD:214587 14/66 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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