DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and lbk

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster


Alignment Length:883 Identity:211/883 - (23%)
Similarity:341/883 - (38%) Gaps:173/883 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 QQNPQTVQQL-SQITVNRTSKSASVTP------TGIRENVMLPS-----ADPEKEAQILYEKSLQ 117
            ||.||  ||| :.:|.|....|...:.      |..|::.|..|     ||.::|........|.
  Fly   142 QQLPQ--QQLFAMLTRNGGGSSGPRSSGGNRGYTSARQHFMALSEDYSDADVDEEDMAALHYPLS 204

  Fly   118 EYH---GSQLSTASTATDVIAGKRTLHSI----------CERWLQ-----------------KHC 152
            ..|   |.|.|::|:...:.:|....:..          .::.|:                 |.|
  Fly   205 ASHPPAGVQGSSSSSGISIQSGSLETNGFVADDGGQYEHAQKALEAAAAAAKASNKYNIDCPKDC 269

  Fly   153 HCTGSLEVLRLSCRGIGILAVPVNLPNEVVVLDLGNNNLTKLEANSFFMAPNLEELTLSDNSIIN 217
            .|   |.|| ..|..:.:..||| ||:.|..|.|.||.                   |:|.:::.
  Fly   270 KC---LNVL-FDCDKLHLERVPV-LPSYVQTLHLANNK-------------------LNDTTVLE 310

  Fly   218 MDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGNALVSLDGDCLGHLQKLRTLRL 282
            :     ..|..|.::||:...|:.:|  .|.||:.|..|.|..|.:.|:..:.|..|..||||.|
  Fly   311 I-----RNLLNLTKVSLKRNLLEVIP--KFIGLSGLKHLVLANNHITSISSESLAALPLLRTLDL 368

  Fly   283 EGNLFYRIPTNALAGLRTLEALNLGSNLLTIINDEDFPRMPNLIVLLLKRNQIMKISAGALKNLT 347
            ..|..:.|..|:......|..|.|..|.:|.:|:..|..:.||..|.|..|::..:.....|||.
  Fly   369 SRNKLHTIELNSFPKSNNLVHLILSFNEITNVNEHSFATLNNLTDLELSNNRLSTLPIRVFKNLN 433

  Fly   348 ALKVLELDDNLIS---SLPEGLSKLSQLQELSITSNRLRWIND--TELPRSMQMLDMRANPLSTI 407
            .||.|.|:.|.:.   |...||..:..||   :.||::|.:.|  ..:...::.:|:..|.:|::
  Fly   434 QLKKLALNFNQLEINWSTFRGLESMKNLQ---LKSNKIRALQDGVFYVMHKIETIDLAMNQISSL 495

  Fly   408 SPGAFRGMSKLRKLILSDVRTLRSFPELEACHALEILKLDRAGIQEVPANLCRQTPRLKSLELKT 472
            |......::|||.|.||          ..|...:|:             :....|..|:.|:|..
  Fly   496 SRQGLFNLTKLRHLNLS----------FNAISRIEV-------------DTWEFTQSLEVLDLSN 537

  Fly   473 NSLKRI--PNLSSCRDLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQD-----AFQ 530
            |::...  .:|.....|:.|:|:.|:::.:|...|:.:|.|.:|.|..||:..:.:|     .|:
  Fly   538 NAINEFKPQHLDCLHRLKTLNLAHNRLQYLQENTFDCVKNLEELNLRRNRLSWIIEDQSAAAPFK 602

  Fly   531 GIPKLQLLDLEGNEISYIHKEAFSGFTALEDLNLGNNIFPELPESGLRALLHL-----KTFN--- 587
            |:.||:.|||.||.:..|..:|.||...||.||||:|....:..:....:|.|     |:.|   
  Fly   603 GLRKLRRLDLHGNNLKQISTKAMSGLNNLEILNLGSNALASIQVNAFEHMLRLNKLVFKSLNFIC 667

  Fly   588 NPKLREFPP--PDTFPRIQTLILSYAYHCCAFLPLVAMSSQKKTSQVQEAVLFPS-----DAEFD 645
            :..|..|..  .:.||:       .|.|.....|...:....|:....|.|...|     :.|.|
  Fly   668 DCDLVWFQQWLKNRFPQ-------QAEHAVCGYPEHLLDRHLKSLSSSELVCVDSPKPRVEQEPD 725

  Fly   646 MTLWNNSMMNIWPQMHNLSKQLGASMHDPWETAINFNEEQLQTQTGGQIATSYMEEYFEEHDVSG 710
            ..|..|: .||..:. ..|....||:....|..|.:..:....|....:......|....||:|.
  Fly   726 DMLAVNA-ANITLEC-IASSPTAASLAAADELKIKWRHDNQHVQERPAVHDGASTETQIRHDLST 788

  Fly   711 PATG-YGFGTGLFSGMSTEDFQPGSVQCLPMPGPFLPCADLFDWWTLRCGVWVVFLLSLLGNGTV 774
            ..|. ||:..  .:.::.|  ..|..||:.........|..|   .:..|:...| |.:..|.|:
  Fly   789 NQTSIYGYLR--LTNVTYE--SAGRYQCVVSNAFGTTYAQKF---KISIGIHPTF-LQVPSNLTL 845

  Fly   775 ----VFVLLCSRSKMDVPRFLVCNLAAADFFMGIYLGILAIVDAATLGEFRMFAIPWQMSVLCQL 835
                :..|:||.|....|...:.....::|            .|||  |.|       :.|:.:.
  Fly   846 DAGEMARLVCSASGDPTPEIALQKFGGSEF------------PAAT--ERR-------LQVIREE 889

  Fly   836 SGFLAVLS--SELSVYTLAVITLERNYAITHAIHLNKR 871
            :.||...:  |:..:||...::......:...:.:|.:
  Fly   890 NAFLITNAKPSDSGIYTCTALSAAGEIKVNATLVVNDK 927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 8/20 (40%)
LRR_RI 180..>383 CDD:238064 58/205 (28%)
leucine-rich repeat 183..204 CDD:275380 4/20 (20%)
LRR_8 203..263 CDD:290566 15/59 (25%)
leucine-rich repeat 205..228 CDD:275380 3/22 (14%)
leucine-rich repeat 229..252 CDD:275380 8/22 (36%)
LRR_8 252..311 CDD:290566 19/58 (33%)
leucine-rich repeat 253..276 CDD:275380 7/22 (32%)
leucine-rich repeat 277..300 CDD:275380 8/22 (36%)
LRR_8 299..359 CDD:290566 20/59 (34%)
leucine-rich repeat 301..324 CDD:275380 7/22 (32%)
leucine-rich repeat 325..348 CDD:275380 7/22 (32%)
LRR_RI 327..567 CDD:238064 70/251 (28%)
leucine-rich repeat 349..371 CDD:275380 8/24 (33%)
LRR_8 370..425 CDD:290566 15/56 (27%)
leucine-rich repeat 372..393 CDD:275380 6/22 (27%)
leucine-rich repeat 394..415 CDD:275380 4/20 (20%)
leucine-rich repeat 418..486 CDD:275380 13/69 (19%)
leucine-rich repeat 441..464 CDD:275378 2/22 (9%)
LRR_8 487..545 CDD:290566 22/62 (35%)
leucine-rich repeat 487..510 CDD:275380 6/22 (27%)
leucine-rich repeat 511..534 CDD:275380 8/27 (30%)
LRR_8 533..589 CDD:290566 22/63 (35%)
leucine-rich repeat 535..558 CDD:275380 10/22 (45%)
leucine-rich repeat 559..580 CDD:275380 7/20 (35%)
7tm_4 764..>892 CDD:304433 22/114 (19%)
7tm_1 770..1017 CDD:278431 20/108 (19%)
lbkNP_611091.2 LRR_RI <275..446 CDD:238064 58/198 (29%)
leucine-rich repeat 293..316 CDD:275380 8/46 (17%)
LRR_8 316..373 CDD:290566 21/58 (36%)
leucine-rich repeat 317..338 CDD:275380 8/22 (36%)
leucine-rich repeat 339..362 CDD:275380 7/22 (32%)
leucine-rich repeat 363..386 CDD:275380 8/22 (36%)
LRR_8 386..445 CDD:290566 20/58 (34%)
leucine-rich repeat 387..410 CDD:275380 7/22 (32%)
leucine-rich repeat 411..434 CDD:275380 7/22 (32%)
leucine-rich repeat 435..457 CDD:275380 8/21 (38%)
LRR_8 457..516 CDD:290566 16/71 (23%)
leucine-rich repeat 458..481 CDD:275380 6/25 (24%)
leucine-rich repeat 482..505 CDD:275380 4/22 (18%)
LRR_RI <498..669 CDD:238064 51/193 (26%)
LRR_8 504..564 CDD:290566 18/82 (22%)
leucine-rich repeat 506..529 CDD:275380 8/45 (18%)
leucine-rich repeat 530..553 CDD:275380 5/22 (23%)
leucine-rich repeat 554..577 CDD:275380 6/22 (27%)
LRR_8 576..641 CDD:290566 27/64 (42%)
leucine-rich repeat 578..604 CDD:275380 7/25 (28%)
leucine-rich repeat 607..630 CDD:275380 10/22 (45%)
leucine-rich repeat 631..652 CDD:275380 7/20 (35%)
LRRCT 665..712 CDD:214507 9/53 (17%)
IG 734..823 CDD:214652 19/93 (20%)
Ig 735..823 CDD:143165 18/92 (20%)
I-set 834..924 CDD:254352 21/111 (19%)
Ig 851..924 CDD:299845 17/93 (18%)
IG 936..1027 CDD:214652
Ig 961..1020 CDD:143165
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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