DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and Rxfp2

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_001012493.1 Gene:Rxfp2 / 363866 RGDID:1309449 Length:737 Species:Rattus norvegicus


Alignment Length:865 Identity:203/865 - (23%)
Similarity:311/865 - (35%) Gaps:277/865 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 NLEELTLSDNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGNALVSLDG 268
            |:.::||::...::..|...|  .:...|...|..||::|..|                      
  Rat    79 NVNKVTLTEECFLSRYPQHCY--CRENELECVNADLKAVPKVS---------------------- 119

  Fly   269 DCLGHLQKLRTLRLEGNLFYRIPTNALAGLRTLEALNLGSNLLTIINDEDFPRMPNLIVLLLKRN 333
                  ..:..|.|:.|..:|:|....:....|..:.|..|.:|.|:...|..:.||.:|.|..|
  Rat   120 ------SNVTLLSLKKNKIHRLPVKVFSKYAELRKIFLQHNCITHISRRAFLGLHNLQILYLSHN 178

  Fly   334 QIMKISAGALKNLTALKVLELDDNLISSLPEGLSKLSQLQELSITSNRLRWINDTELPRSMQMLD 398
            .|..:..|..|:|..|..|.|||                                          
  Rat   179 CITSLRPGIFKDLHQLAWLILDD------------------------------------------ 201

  Fly   399 MRANPLSTISPGAFRGMSKLRKLILSDVRTLRSFPELEACHALEILKLDRAGIQEVPANLCRQTP 463
               ||::.||..:|.|::.|  ..||.|..     .|||                :|..||.|.|
  Rat   202 ---NPITRISQRSFTGLNSL--FFLSMVSN-----RLEA----------------LPERLCAQMP 240

  Fly   464 RLKSLELKTNSLKRIPNLS--SCRDLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQ 526
            :|..::|..|.:|.|.|.:  :|..|.:|.|..|||..:..|.|:.||.|.:|.||.|.|..||.
  Rat   241 QLNWVDLANNGIKFITNSTFLTCDSLTVLFLPRNQIGFVPEKTFSSLKNLGELDLSSNVIAKLPA 305

  Fly   527 DAFQGIPKLQLLDLEGNEISYIHKEAFSGFTALEDLNLGNNIFPELPESGLRAL-----LHLKTF 586
            ..|..:..||.|:|..|.:.|:||..|.....|:.|:|.....|.:.....|.:     ::||||
  Rat   306 HLFSDLHLLQKLNLSSNPLLYVHKNQFGSLKQLQSLDLERIEIPNINTGMFRPMKNLSHIYLKTF 370

  Fly   587 NNPKLREFPPPDTFPRIQTLILSYAYHCCAFLPLVAMSSQKKTSQVQEAVLFPSDAEFDMTLWNN 651
                                      ..|:::|.|             .:..||           
  Rat   371 --------------------------RYCSYVPHV-------------RICMPS----------- 385

  Fly   652 SMMNIWPQMHNLSKQLGASMHDPWETAINFNEEQLQTQTGGQIATSYMEEYFEEHDVSGPATGYG 716
                                                  |.|               :|       
  Rat   386 --------------------------------------TDG---------------IS------- 390

  Fly   717 FGTGLFSGMSTEDFQPGSVQCLPMPGPFLPCADLFDWWTLRCGVWVVFLLSLLGNGTVVFVLLCS 781
                     |:||....|:                    ||..|||:..::..||..|:.|....
  Rat   391 ---------SSEDLLANSI--------------------LRVSVWVIAFITCAGNFLVIAVRSLI 426

  Fly   782 RSKMDVPRFLVCNLAAADFFMGIYLGILAIVDAATLGEFRMFAIPWQMSVLCQLSGFLAVLSSEL 846
            :::.......:..|..||..||:||..:.:.|....|:::.:|:.|..||.|:|.||||.||:|:
  Rat   427 KAENTTHAMSIKILCCADCLMGVYLFSVGVFDIKYRGQYQKYALLWMESVPCRLLGFLATLSTEV 491

  Fly   847 SVYTLAVITLERNYAITHAIHLNKRLSLKQAGYIMSVGWVFALIMALMPLVGV----SDYRKFAV 907
            ||..|..:|||:...|..... |.||..:|...:::..||...::|.:|....    :.|.|..|
  Rat   492 SVLLLTFLTLEKFLVIVFPFS-NLRLGKRQTAVVLASIWVAGFLIAAVPFTSEDYFGNFYGKNGV 555

  Fly   908 CLP--FETTTGPASLTYVISLMF-INGCAFLTLMGCYLKMYWAIRGSQAWNTNDSR--------I 961
            |.|  ::......|..|.:.:.. :|..|||.:...|:.|:.:|: ..|..|.:.|        :
  Rat   556 CFPLHYDQAEDFGSRGYSLGIFLGVNLLAFLVITFSYVTMFCSIQ-KTALQTAEVRSHIGKEVAV 619

  Fly   962 AKRMALLVFTDFLCWSPIAFFSITAIFGLQLISLEQAKI-------FTVFVLPLNSCCNPFLYAI 1019
            |.|...:||:|.:||.|        :|.::::||.|.:|       ..||.||:||..||.||.:
  Rat   620 ANRFFFIVFSDAICWIP--------VFVVKILSLLQVEIPGTITSWIVVFFLPVNSALNPILYTL 676

  Fly  1020 MTKQFKKDCVTLC-KHFEES 1038
            .|..||.....|. ||..:|
  Rat   677 TTSLFKDKLKQLLHKHRRKS 696

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064 36/178 (20%)
leucine-rich repeat 183..204 CDD:275380 203/865 (23%)
LRR_8 203..263 CDD:290566 11/58 (19%)
leucine-rich repeat 205..228 CDD:275380 4/22 (18%)
leucine-rich repeat 229..252 CDD:275380 6/22 (27%)
LRR_8 252..311 CDD:290566 8/58 (14%)
leucine-rich repeat 253..276 CDD:275380 0/22 (0%)
leucine-rich repeat 277..300 CDD:275380 5/22 (23%)
LRR_8 299..359 CDD:290566 20/59 (34%)
leucine-rich repeat 301..324 CDD:275380 6/22 (27%)
leucine-rich repeat 325..348 CDD:275380 8/22 (36%)
LRR_RI 327..567 CDD:238064 68/241 (28%)
leucine-rich repeat 349..371 CDD:275380 5/21 (24%)
LRR_8 370..425 CDD:290566 8/54 (15%)
leucine-rich repeat 372..393 CDD:275380 0/20 (0%)
leucine-rich repeat 394..415 CDD:275380 5/20 (25%)
leucine-rich repeat 418..486 CDD:275380 19/69 (28%)
leucine-rich repeat 441..464 CDD:275378 4/22 (18%)
LRR_8 487..545 CDD:290566 24/57 (42%)
leucine-rich repeat 487..510 CDD:275380 9/22 (41%)
leucine-rich repeat 511..534 CDD:275380 9/22 (41%)
LRR_8 533..589 CDD:290566 18/60 (30%)
leucine-rich repeat 535..558 CDD:275380 9/22 (41%)
leucine-rich repeat 559..580 CDD:275380 5/20 (25%)
7tm_4 764..>892 CDD:304433 39/127 (31%)
7tm_1 770..1017 CDD:278431 79/268 (29%)
Rxfp2NP_001012493.1 LDLa 28..63 CDD:238060
leucine-rich repeat 96..121 CDD:275380 7/54 (13%)
leucine-rich repeat 122..145 CDD:275380 5/22 (23%)
LRR_RI 134..343 CDD:238064 77/276 (28%)
LRR_8 145..204 CDD:290566 21/103 (20%)
leucine-rich repeat 146..169 CDD:275380 6/22 (27%)
leucine-rich repeat 170..193 CDD:275380 8/22 (36%)
LRR_8 193..252 CDD:290566 26/126 (21%)
leucine-rich repeat 194..217 CDD:275380 11/67 (16%)
leucine-rich repeat 218..241 CDD:275380 11/45 (24%)
leucine-rich repeat 242..265 CDD:275380 7/22 (32%)
LRR_8 265..324 CDD:290566 24/58 (41%)
leucine-rich repeat 266..289 CDD:275380 9/22 (41%)
leucine-rich repeat 290..313 CDD:275380 9/22 (41%)
LRR_8 314..367 CDD:290566 14/52 (27%)
leucine-rich repeat 314..337 CDD:275380 9/22 (41%)
leucine-rich repeat 338..357 CDD:275380 4/18 (22%)
7tm_1 415..674 CDD:278431 79/268 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2087
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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