DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and CG42346

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster


Alignment Length:1856 Identity:361/1856 - (19%)
Similarity:605/1856 - (32%) Gaps:685/1856 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 ETKENPAP-----DMQNSQEQEPYVHLQHLQQQQQQNPQTVQ---------------QLSQITVN 80
            |.:||..|     ..||.|:|.|..:.|.:||||||..|..|               |:.|:.:.
  Fly    38 ENRENLVPQKQRAQRQNKQQQHPQQYPQMMQQQQQQQQQQRQEQHQEQHNQRQQQGRQIEQMAMG 102

  Fly    81 RTSKSAS-------VTPT------------------GIRENV-------------MLPSA----- 102
            ..:::|:       ..||                  |::::|             :||:|     
  Fly   103 TNAEAAAAKKHKHQTKPTDSECEGKHKHKRNRNNVAGVQQHVLRLKLELQLLLCALLPTALLLGL 167

  Fly   103 ---DPEKEAQILY--------EKSLQEYHGSQL------STASTATDVIAGKRT----------L 140
               .|...|..:.        |..|.|..|..:      |:...|.....|..|          .
  Fly   168 LPLPPGAAATAMISSAKGSVRELLLTEMGGGGVGVGVGGSSGGAAHPAGGGPGTGLAGGDGGGAA 232

  Fly   141 HSICERWLQKHCHCTGSLEVLRLSCRG---------IGILAVPV--------------------- 175
            ...|..:....|.|....:.|.|.|.|         :..::.|:                     
  Fly   233 GIECPSFDNTACPCYKFEDGLFLECPGTTAISLRSTLERISAPIHSLSIYDFDRSVTSLSQDVFQ 297

  Fly   176 ------------------------NLPNEVVVLDLGNNNLTKLEANSFFMAPNLEELTLSDNSII 216
                                    |:.:.:..|.:.|..||::.:.:......|..|....|.|:
  Fly   298 PGVHIRHLQFSHSHLEALKDNSLRNVRSSLESLSIVNGKLTQMPSRALSSMQKLTALDFDYNEIV 362

  Fly   217 NMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQ-LTSLQLNGNALVSLDGDCLGHLQKLRTL 280
            .:|..:|||| ::.:|:::...|:.:|..:|.||.: :..:.::.|.|.:.....|..|..||.|
  Fly   363 RVDDYSFYGL-RISKLNMKGNRLQGMPEHAFAGLEECMQEIDVSENGLRTFPLMALRKLDHLRIL 426

  Fly   281 RLEGNLFYRIPT----------NALAGLRTLEALNLGSNLLTIINDEDFPRMPNLIVLLLKRNQI 335
            ||..|   ||||          ||.|....:.|..|                |:||.|.|..||.
  Fly   427 RLSNN---RIPTFYGDIQLATNNASAAAAAVGAFQL----------------PSLIFLDLSSNQF 472

  Fly   336 MKISAGALKNLTALKVLELDDNLISSL-PEGLSKLSQLQELSITSNRLRWINDT--ELPRSMQML 397
            .:|.....:....||.|....|.|..: ||....|.:|..|.::.||:..::..  |..:.:|.:
  Fly   473 AEIGPDCFRAFPQLKTLSFYANQIELVQPEAFKSLRELMSLDMSHNRIIGLDPKVFEKNKRLQTV 537

  Fly   398 DMRANPLSTISPGAFRGMSKLRKLILSDVRTLRSFPELEA-----CHALEILKLDRAGIQEVPAN 457
            |:..|.:.||. |.|..:.:||::.||:...|    ||.|     ...::::.|:...|..:..|
  Fly   538 DLSHNHIHTIG-GVFSNLPQLREVFLSENNIL----ELPADAFTNSTNVDVIYLESNAIAHIDPN 597

  Fly   458 LCRQTPRLKSLELKTNSLKRIPNLSSCRDLRL--LDLSSNQIEKIQGKPFNGLKQLNDLLLSYNR 520
            :......|..|.|::|.:..:|.....:..:|  |.|.:|:|:.::...|..|:.|.::.|..||
  Fly   598 VFSTLVNLDHLYLRSNFIPLLPVTLFDKSTKLTSLSLDNNEIQDLEIGMFRKLEHLREVRLHNNR 662

  Fly   521 IKALPQDAFQGIPKLQLLDLEGNEISYIHKEAFSGFTALEDLNLGNN-------IFPELPESGLR 578
            |:.:.:..|:.:|.||.|.::.|.|..|..:||.....::.:||.:|       |||:...|.|.
  Fly   663 IRRVRRGVFEPLPSLQELHIQKNSIEDIEPQAFHTLENMQHINLQDNQLTVLEDIFPDENSSLLS 727

  Fly   579 ALL--------HLKTF-----------------------------------NNPKLREFPPPDTF 600
            ..|        |.:||                                   ::.|:|:. ..|||
  Fly   728 VQLEANYLHKVHPRTFSRQQKVQIMWLKDNQLTRVERSFFADTPQLGRLYLSDNKIRDI-EKDTF 791

  Fly   601 PRIQTLILSYAYHCCAFLPLVAMSSQKKTSQVQEAVLFPSDAEFDMTLWNNSMMNI----WPQMH 661
              :..|:|.       ||.|    |..:..|::.....|.....:::|..|.:..|    :.::.
  Fly   792 --VNLLLLQ-------FLDL----SGNQLRQLRRDYFAPLQDLEELSLARNHIEAIEGYAFAKLK 843

  Fly   662 NLSKQLGASMHDP---WETAINFNEEQLQTQTGGQIATSYMEEY-FE----------EHDVSGPA 712
            || |.|..| |:|   ....|..||..|.:...|..:...:|:: |:          |.:...||
  Fly   844 NL-KSLDLS-HNPLVQLTRDIFSNEFPLNSLNLGNCSLRKLEQHAFKSLTNLNELNLERNQLNPA 906

  Fly   713 T-------------------GYGFGTGLFSGMSTEDFQPGSVQCLPMPG------PFLPCA---- 748
            .                   .|....|:.:||..   :..|:|.|.|..      |.|..|    
  Fly   907 DIQTLDIPNLRRLLLSHNNFSYAGSVGIMAGMLD---RLRSLQQLSMSNCSLGQIPDLLFAKNTN 968

  Fly   749 ----DLFDWWTLRCGVWVVFLLSLLGNGTVVF--VLLCSRSKMDVPRFLVCNLAAADFFMGIYLG 807
                ||       |...:..:...:.:|..||  :.||.....|.|...:.||:..: .:.:...
  Fly   969 LVRLDL-------CDNRLTQINRNIFSGLNVFKELRLCRNELSDFPHIALYNLSTLE-SLDLARN 1025

  Fly   808 ILAIVDAATL-GEFRMFAIPWQMSVLCQLSGFLAVLSSELSVYTLA---VITLERNYAITHAIHL 868
            .||.:|...| |...:..:..:.:.:..||||.||..::|....|:   :::|..|: :.|:|:|
  Fly  1026 QLASIDFFKLSGTLNLRQLILRDNKITALSGFNAVNLTQLDSVDLSGNLLLSLPANF-LRHSINL 1089

  Fly   869 NKRLSLKQAGYIMSVGWVFALIMALMPLVGVSDYRKFAVCLP----FETTTGPASLTYVI----- 924
            .| :.|....::.            :|...:||     |.:|    ...|..|.:..|.:     
  Fly  1090 QK-VHLSNNRFLQ------------IPSSALSD-----VSIPRLSWLNLTGNPINRIYTVKEERY 1136

  Fly   925 ---SLMFI--NGCAFLTLMGCYLKMYWAIRGSQAWNTNDSRIAKRMALLVFTDFLCWSPIAFFSI 984
               ..::|  ...:.||     .|.:.|.:..|..:..::||.:            .||.||.|:
  Fly  1137 PYLKELYICQTNLSILT-----SKDFEAFQALQHLHLVNNRITR------------ISPGAFKSL 1184

  Fly   985 TAIF------------------GLQLI--------SLEQAKIFTVFVLPLNSCCNPF--LYAIMT 1021
            |.:.                  ||:|:        :|:..:.|:|.:|.:.:....|  |..|..
  Fly  1185 TNLLTLDLSVNELEMLPKERLQGLRLLRFLNISHNTLKDLEEFSVDLLEMQTLDLSFNQLDRISK 1249

  Fly  1022 KQF----------------------------KKDCVTLCKHFEE--------------------- 1037
            |.|                            |...:.|.|::.|                     
  Fly  1250 KTFRNLHGLLELFLMGNRMTVLSNDAFRFLRKLHVLDLRKNYFELVPLEPLRPLETNLRTLRLEE 1314

  Fly  1038 ------------------------------SRVVGG--GGPGG--------------RGAVARTK 1056
                                          .|.:||  ||.||              ||.|.   
  Fly  1315 NPLHCSCDAQKLWEWLRDHRKWSLSMGSGAGRGIGGLTGGLGGDSINYLRCEHPTELRGKVF--- 1376

  Fly  1057 RGDLPP------PLLPAAAVAHPPGCRCLRMLP-SEMPNWHKMEQ-------------------- 1094
             |.:.|      ||:|..|:..        :.| |.:.:|...:.                    
  Fly  1377 -GRMEPQQFCDAPLIPKMAIQD--------IQPYSVVVSWQSRDHLGLNGFEIVYHATGDGLVTA 1432

  Fly  1095 -TPSMWQR--LRTFCCGENRRRRKQRRQPQQRRQRAYTAAAANPYQYQFA--ELRQQRQNRASSI 1154
             :|:..:|  ||.....|.:|.|.|.|:..:.|.|   ....:..::..|  |:..:|.|..:|.
  Fly  1433 GSPTSRERDSLRDIHDPERQRTRDQARERSRERDR---DRERDRERFSIATDEIHGKRLNGTASS 1494

  Fly  1155 S-----SEN----FCSSRSSSWRHGPPS--------------------SAPVPPGNCSMPLKMLE 1190
            :     |.|    .|...|.:|...|.:                    |||:|        :...
  Fly  1495 TKLTKLSPNTRYHICVIGSGNWLSEPLANALQRLHTNESLREEEAVMMSAPLP--------ESFS 1551

  Fly  1191 PHAHPHG--------------HGRRRHSAWLITRKTSQDSNLSSSRNDSSASA-----TTASTST 1236
            |:.|.|.              |.::::....:.....||:.|.....:|..||     |..||.:
  Fly  1552 PYQHQHNRNSNGNANPAMVQDHNKKQNPDQDLDNVVGQDNALMEVLKNSHISACTDVQTLDSTPS 1616

  Fly  1237 FRLSRSSAGSSTPLPSIIA---------------------------------HNGKAQLDAVKPR 1268
            .....:...|:..:.||:.                                 .|.|.|. |:.|.
  Fly  1617 LVTDENGLSSNGFIHSILTRRLGLIVGCCLGIIVFIVMISVLSYVKLKKKRIENAKRQA-ALPPE 1680

  Fly  1269 LV--RQEAVQEEE----------------------------DSSPPRLGVRFLPTIPSAADSSVV 1303
            .:  |..::..||                            :.|.|.:.     ::||...:.: 
  Fly  1681 YISYRHFSIPNEELTRTAANAGTVAAAAAANNSHNSNNSTDEGSSPHMS-----SVPSGISAHI- 1739

  Fly  1304 MEDGDSANTGVASFLGMPLPGASSGFLIAPTTAATT 1339
              .|.|.:||          |..:|   :.||.|||
  Fly  1740 --SGTSLSTG----------GTGTG---STTTTATT 1760

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 6/74 (8%)
LRR_RI 180..>383 CDD:238064 58/214 (27%)
leucine-rich repeat 183..204 CDD:275380 4/20 (20%)
LRR_8 203..263 CDD:290566 16/60 (27%)
leucine-rich repeat 205..228 CDD:275380 9/22 (41%)
leucine-rich repeat 229..252 CDD:275380 6/22 (27%)
LRR_8 252..311 CDD:290566 19/69 (28%)
leucine-rich repeat 253..276 CDD:275380 4/22 (18%)
leucine-rich repeat 277..300 CDD:275380 13/32 (41%)
LRR_8 299..359 CDD:290566 14/59 (24%)
leucine-rich repeat 301..324 CDD:275380 2/22 (9%)
leucine-rich repeat 325..348 CDD:275380 7/22 (32%)
LRR_RI 327..567 CDD:238064 65/249 (26%)
leucine-rich repeat 349..371 CDD:275380 8/22 (36%)
LRR_8 370..425 CDD:290566 15/56 (27%)
leucine-rich repeat 372..393 CDD:275380 5/22 (23%)
leucine-rich repeat 394..415 CDD:275380 7/20 (35%)
leucine-rich repeat 418..486 CDD:275380 16/72 (22%)
leucine-rich repeat 441..464 CDD:275378 3/22 (14%)
LRR_8 487..545 CDD:290566 18/59 (31%)
leucine-rich repeat 487..510 CDD:275380 7/24 (29%)
leucine-rich repeat 511..534 CDD:275380 6/22 (27%)
LRR_8 533..589 CDD:290566 21/105 (20%)
leucine-rich repeat 535..558 CDD:275380 8/22 (36%)
leucine-rich repeat 559..580 CDD:275380 8/27 (30%)
7tm_4 764..>892 CDD:304433 29/133 (22%)
7tm_1 770..1017 CDD:278431 59/294 (20%)
CG42346NP_001036303.2 leucine-rich repeat 303..325 CDD:275380 1/21 (5%)
LRR_8 325..384 CDD:290566 14/59 (24%)
leucine-rich repeat 327..350 CDD:275380 4/22 (18%)
leucine-rich repeat 351..461 CDD:275380 34/129 (26%)
LRR_8 373..433 CDD:290566 16/62 (26%)
LRR_RI 397..648 CDD:238064 68/274 (25%)
leucine-rich repeat 399..422 CDD:275380 4/22 (18%)
leucine-rich repeat 462..485 CDD:275380 7/22 (32%)
LRR_8 465..520 CDD:290566 16/54 (30%)
leucine-rich repeat 486..509 CDD:275380 8/22 (36%)
LRR_8 508..567 CDD:290566 16/59 (27%)
leucine-rich repeat 510..533 CDD:275380 5/22 (23%)
LRR_RI 527..785 CDD:238064 59/262 (23%)
leucine-rich repeat 534..556 CDD:275380 7/22 (32%)
LRR_8 555..613 CDD:290566 14/61 (23%)
leucine-rich repeat 557..580 CDD:275380 8/26 (31%)
leucine-rich repeat 581..604 CDD:275380 3/22 (14%)
LRR_8 604..663 CDD:290566 15/58 (26%)
leucine-rich repeat 605..628 CDD:275380 5/22 (23%)
leucine-rich repeat 629..652 CDD:275380 7/22 (32%)
LRR_8 652..711 CDD:290566 18/58 (31%)
leucine-rich repeat 653..676 CDD:275380 6/22 (27%)
leucine-rich repeat 677..700 CDD:275380 8/22 (36%)
leucine-rich repeat 701..748 CDD:275380 12/46 (26%)
leucine-rich repeat 725..736 CDD:275378 2/10 (20%)
leucine-rich repeat 749..772 CDD:275380 0/22 (0%)
LRR_8 771..831 CDD:290566 15/73 (21%)
leucine-rich repeat 773..793 CDD:275380 5/22 (23%)
LRR_RI 804..1076 CDD:238064 58/284 (20%)
LRR_8 821..903 CDD:290566 18/83 (22%)
leucine-rich repeat 821..844 CDD:275380 3/22 (14%)
leucine-rich repeat 845..868 CDD:275380 9/24 (38%)
leucine-rich repeat 869..892 CDD:275380 4/22 (18%)
leucine-rich repeat 893..915 CDD:275380 3/21 (14%)
leucine-rich repeat 916..944 CDD:275380 4/30 (13%)
leucine-rich repeat 945..968 CDD:275380 6/22 (27%)
LRR_8 967..1027 CDD:290566 12/67 (18%)
leucine-rich repeat 969..992 CDD:275380 4/29 (14%)
leucine-rich repeat 993..1014 CDD:275380 5/20 (25%)
LRR_8 1015..1075 CDD:290566 13/60 (22%)
leucine-rich repeat 1017..1040 CDD:275380 5/23 (22%)
leucine-rich repeat 1041..1064 CDD:275380 6/22 (27%)
LRR_RI <1047..1244 CDD:238064 45/232 (19%)
LRR_8 1063..1125 CDD:290566 15/80 (19%)
leucine-rich repeat 1089..1114 CDD:275380 7/42 (17%)
leucine-rich repeat 1115..1162 CDD:275380 8/51 (16%)
LRR_8 1163..1219 CDD:290566 12/67 (18%)
leucine-rich repeat 1163..1186 CDD:275380 8/34 (24%)
leucine-rich repeat 1187..1210 CDD:275380 2/22 (9%)
leucine-rich repeat 1211..1233 CDD:275380 3/21 (14%)
leucine-rich repeat 1234..1257 CDD:275380 5/22 (23%)
LRR_8 1235..1292 CDD:290566 8/56 (14%)
leucine-rich repeat 1258..1279 CDD:275380 0/20 (0%)
leucine-rich repeat 1282..1306 CDD:275380 3/23 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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