DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and Dnaaf11

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_038934705.1 Gene:Dnaaf11 / 299920 RGDID:1559937 Length:486 Species:Rattus norvegicus


Alignment Length:184 Identity:49/184 - (26%)
Similarity:75/184 - (40%) Gaps:40/184 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   412 FRGMSKLRKLILSDVRTLRSFPELEACH------ALEILKLDRAGIQEVP--ANLCRQTPRLKSL 468
            ||.:..::.|:|.:|..........|.|      :||.|.|.:..|:.:.  ...||.   ||.|
  Rat     2 FRSLPNVQGLLLVNVGVTEDLIRRNAEHNECVIFSLEELSLHQQEIERLEHIDKWCRD---LKIL 63

  Fly   469 ELKTNSLKRIPNLSSCRDLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYN------RIKAL--- 524
            .|:.|.:.:|.|:|..:.|..|:|:.|.||:|:.  ..|.:.|..|.|:.|      .||.|   
  Rat    64 YLQNNLIAKIENVSKLKKLEYLNLALNNIERIEN--LEGCEWLTKLDLTVNFIGELSSIKTLTHN 126

  Fly   525 -----------PQDAFQG------IPKLQLLDLEGNEISYIHK-EAFSGFTALE 560
                       |...|.|      :...||..|:|.||....: :|...:.|:|
  Rat   127 IHLRELFLVGNPCADFDGYREFVVVTLQQLKWLDGKEIERSERIQALQNYAAVE 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064
leucine-rich repeat 183..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..311 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
LRR_8 299..359 CDD:290566
leucine-rich repeat 301..324 CDD:275380
leucine-rich repeat 325..348 CDD:275380
LRR_RI 327..567 CDD:238064 49/184 (27%)
leucine-rich repeat 349..371 CDD:275380
LRR_8 370..425 CDD:290566 4/12 (33%)
leucine-rich repeat 372..393 CDD:275380
leucine-rich repeat 394..415 CDD:275380 2/2 (100%)
leucine-rich repeat 418..486 CDD:275380 20/75 (27%)
leucine-rich repeat 441..464 CDD:275378 7/24 (29%)
LRR_8 487..545 CDD:290566 22/83 (27%)
leucine-rich repeat 487..510 CDD:275380 8/22 (36%)
leucine-rich repeat 511..534 CDD:275380 10/48 (21%)
LRR_8 533..589 CDD:290566 9/29 (31%)
leucine-rich repeat 535..558 CDD:275380 7/23 (30%)
leucine-rich repeat 559..580 CDD:275380 1/2 (50%)
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
Dnaaf11XP_038934705.1 leucine-rich repeat 8..35 CDD:275378 5/26 (19%)
PPP1R42 <37..179 CDD:411060 40/146 (27%)
leucine-rich repeat 37..59 CDD:275378 6/21 (29%)
leucine-rich repeat 60..81 CDD:275378 8/20 (40%)
leucine-rich repeat 82..103 CDD:275378 8/22 (36%)
leucine-rich repeat 104..128 CDD:275378 7/23 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.