Sequence 1: | NP_476702.1 | Gene: | rk / 34819 | FlyBaseID: | FBgn0003255 | Length: | 1360 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_037110.1 | Gene: | Lhcgr / 25477 | RGDID: | 3007 | Length: | 700 | Species: | Rattus norvegicus |
Alignment Length: | 724 | Identity: | 242/724 - (33%) |
---|---|---|---|
Similarity: | 367/724 - (50%) | Gaps: | 115/724 - (15%) |
- Green bases have known domain annotations that are detailed below.
Fly 342 ALKNLTALKVLELDDNLISSLPEGLSKLSQLQELSITSNR------------LRWINDTELPRS- 393
Fly 394 MQMLDMRANPLSTISPGAFRGMSKLRKLILSDVRTLRSFPELEACHALEILKLDRAGIQE----- 453
Fly 454 -VPANLCRQTPRLKSLELKTNSLKRIPN---LSSCRDLRLLDLSSN-QIEKIQGKPFNGLKQLND 513
Fly 514 LLLSY-NRIKALPQDAFQGIPKLQLLDLEGNEISYI---HKEAFSGFTALEDLNLGNNIFPELPE 574
Fly 575 SGLRALLHLKTFNNPKLREFPPPDTFPRIQTLILSYAYHCCAF--LPLVAMSSQKKTSQVQEAVL 637
Fly 638 FPSDAEFDMTLWNNSMMNIWPQMHNLSKQLGASMHDPWETAINFNEEQLQTQTGGQIATSYMEEY 702
Fly 703 FEEHDVSGPATGYGFGTGLFSGMSTEDFQPGSVQCLPMPGPFLPCADLFDWWTLRCGVWVVFLLS 767
Fly 768 LLGNGTVVFVLLCSRSKMDVPRFLVCNLAAADFFMGIYLGILAIVDAATLGEFRMFAIPWQMSVL 832
Fly 833 CQLSGFLAVLSSELSVYTLAVITLERNYAITHAIHLNKRLSLKQAGYIMSVGWVFALIMALMPLV 897
Fly 898 GVSDYRKFAVCLPFETTTGPASLTYVISLMFINGCAFLTLMGCYLKMYWAIRGSQAWNTN-DSRI 961
Fly 962 AKRMALLVFTDFLCWSPIAFFSITAIFGLQLISLEQAKIFTVFVLPLNSCCNPFLYAIMTKQFKK 1026
Fly 1027 DCVTLCKHF 1035 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
rk | NP_476702.1 | leucine-rich repeat | 158..179 | CDD:275380 | |
LRR_RI | 180..>383 | CDD:238064 | 13/52 (25%) | ||
leucine-rich repeat | 183..204 | CDD:275380 | |||
LRR_8 | 203..263 | CDD:290566 | |||
leucine-rich repeat | 205..228 | CDD:275380 | |||
leucine-rich repeat | 229..252 | CDD:275380 | |||
LRR_8 | 252..311 | CDD:290566 | |||
leucine-rich repeat | 253..276 | CDD:275380 | |||
leucine-rich repeat | 277..300 | CDD:275380 | |||
LRR_8 | 299..359 | CDD:290566 | 6/16 (38%) | ||
leucine-rich repeat | 301..324 | CDD:275380 | |||
leucine-rich repeat | 325..348 | CDD:275380 | 3/5 (60%) | ||
LRR_RI | 327..567 | CDD:238064 | 65/251 (26%) | ||
leucine-rich repeat | 349..371 | CDD:275380 | 5/21 (24%) | ||
LRR_8 | 370..425 | CDD:290566 | 17/67 (25%) | ||
leucine-rich repeat | 372..393 | CDD:275380 | 6/32 (19%) | ||
leucine-rich repeat | 394..415 | CDD:275380 | 6/20 (30%) | ||
leucine-rich repeat | 418..486 | CDD:275380 | 17/76 (22%) | ||
leucine-rich repeat | 441..464 | CDD:275378 | 4/28 (14%) | ||
LRR_8 | 487..545 | CDD:290566 | 16/59 (27%) | ||
leucine-rich repeat | 487..510 | CDD:275380 | 7/23 (30%) | ||
leucine-rich repeat | 511..534 | CDD:275380 | 6/23 (26%) | ||
LRR_8 | 533..589 | CDD:290566 | 16/58 (28%) | ||
leucine-rich repeat | 535..558 | CDD:275380 | 9/25 (36%) | ||
leucine-rich repeat | 559..580 | CDD:275380 | 5/20 (25%) | ||
7tm_4 | 764..>892 | CDD:304433 | 66/127 (52%) | ||
7tm_1 | 770..1017 | CDD:278431 | 119/247 (48%) | ||
Lhcgr | NP_037110.1 | leucine-rich repeat | 55..78 | CDD:275380 | 7/22 (32%) |
LRR_5 | 66..204 | CDD:404228 | 35/143 (24%) | ||
leucine-rich repeat | 79..103 | CDD:275380 | 5/26 (19%) | ||
leucine-rich repeat | 104..128 | CDD:275380 | 3/23 (13%) | ||
LRR 1 | 126..150 | 6/23 (26%) | |||
leucine-rich repeat | 129..150 | CDD:275380 | 4/20 (20%) | ||
LRR 2 | 152..175 | 6/22 (27%) | |||
leucine-rich repeat | 155..178 | CDD:275380 | 7/22 (32%) | ||
LRR 3 | 176..200 | 5/23 (22%) | |||
leucine-rich repeat | 179..202 | CDD:275380 | 6/25 (24%) | ||
LRR 4 | 202..224 | 8/21 (38%) | |||
leucine-rich repeat | 203..227 | CDD:275380 | 9/23 (39%) | ||
LRR 5 | 225..248 | 6/22 (27%) | |||
leucine-rich repeat | 228..248 | CDD:275380 | 5/19 (26%) | ||
LRR 6 | 250..271 | 4/20 (20%) | |||
7tmA_LHCGR | 365..638 | CDD:320481 | 130/273 (48%) | ||
TM helix 1 | 366..390 | CDD:320481 | 11/23 (48%) | ||
TM helix 2 | 399..420 | CDD:320481 | 13/20 (65%) | ||
TM helix 3 | 444..466 | CDD:320481 | 13/21 (62%) | ||
TM helix 4 | 489..505 | CDD:320481 | 6/15 (40%) | ||
TM helix 5 | 529..552 | CDD:320481 | 7/22 (32%) | ||
TM helix 6 | 572..594 | CDD:320481 | 14/21 (67%) | ||
TM helix 7 | 606..631 | CDD:320481 | 14/24 (58%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2087 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |