DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and Fshr

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_954707.1 Gene:Fshr / 25449 RGDID:2632 Length:692 Species:Rattus norvegicus


Alignment Length:904 Identity:249/904 - (27%)
Similarity:371/904 - (41%) Gaps:290/904 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 CERWLQKHCHCTGSLEVLRLSCRGIGILAVPVNLPNEVVVLDLGNNNLTKLEANSFFMAPNLEEL 208
            |..||   |||:..:    ..|:...:..:|.:||...:.|..   .|||               
  Rat    18 CHHWL---CHCSNRV----FLCQDSKVTEIPTDLPRNAIELRF---VLTK--------------- 57

  Fly   209 TLSDNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGN-ALVSLDGDCLG 272
                                          |:.:|..||.|...|..::::.| .|..::.|...
  Rat    58 ------------------------------LRVIPKGSFAGFGDLEKIEISQNDVLEVIEADVFS 92

  Fly   273 HLQKLRTLRLE--GNLFYRIPTNALAGLRTLEALNLGSNLLTIINDEDFPRMPNLIVLLLKRNQI 335
            :|.||..:|:|  .||.|                         ||.|.|..:|:|..||      
  Rat    93 NLPKLHEIRIEKANNLLY-------------------------INPEAFQNLPSLRYLL------ 126

  Fly   336 MKISAGALKNLTALKVLELDDNLISSLPEGLSKLSQLQELSITSNRLRWINDTELPRSMQMLDMR 400
              ||...:|:|.|                 :.|:..||::                    :||::
  Rat   127 --ISNTGIKHLPA-----------------VHKIQSLQKV--------------------LLDIQ 152

  Fly   401 AN-PLSTISPGAFRGMSKLRKLILSDVRTLRSFPELEACHALEILKLDRAGIQEVPANLCRQTPR 464
            .| .:..::..:|.|:|                                                
  Rat   153 DNINIHIVARNSFMGLS------------------------------------------------ 169

  Fly   465 LKSLELKTNSLKRIPNLSSCRDLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLS-YNRIKALPQDA 528
            .:|:                    :|.||.|.||:|....||| .||::|.|| .|.::.||.|.
  Rat   170 FESV--------------------ILWLSKNGIEEIHNCAFNG-TQLDELNLSDNNNLEELPNDV 213

  Fly   529 FQGIPKLQLLDLEGNEISYIHKEAFSGFTALEDLNLGNNIFPELPESGLRALLHLKTFNNPKLRE 593
            |||.....:||:...::.                        .||..||..|..|:..:..:|::
  Rat   214 FQGASGPVILDISRTKVH------------------------SLPNHGLENLKKLRARSTYRLKK 254

  Fly   594 FPPPDTFPRIQTLILSYAYHCCAFLPLVAMSSQKKTSQVQEAVLFPSDAEFDMTLWNNSMMNIWP 658
            .|..|.|..:....|:|..|||||.                                        
  Rat   255 LPNLDKFVTLMEASLTYPSHCCAFA---------------------------------------- 279

  Fly   659 QMHNLSKQLGASMHDPWETAINFNEEQLQTQTGGQIATSYMEEYFEEHDVSGPATGYGFGTGLFS 723
               ||.:|: :.:|.....:|...:....||.|.|..:...:|         |:.|.|      |
  Rat   280 ---NLKRQI-SELHPICNKSILRQDIDDMTQIGDQRVSLIDDE---------PSYGKG------S 325

  Fly   724 GMSTEDF------QPGSVQCLPMPGPFLPCADLFDWWTLRCGVWVVFLLSLLGNGTVVFVLLCSR 782
            .|...:|      :...|.|.|.|..|.||.|:..:..||..:|.:.:|::.||.||:.||..|:
  Rat   326 DMMYNEFDYDLCNEVVDVTCSPKPDAFNPCEDIMGYNILRVLIWFISILAITGNTTVLVVLTTSQ 390

  Fly   783 SKMDVPRFLVCNLAAADFFMGIYLGILAIVDAATLGEFRMFAIPWQMSVLCQLSGFLAVLSSELS 847
            .|:.|||||:||||.||..:||||.::|.||..|..::..:||.||....|..:||..|.:||||
  Rat   391 YKLTVPRFLMCNLAFADLCIGIYLLLIASVDIHTKSQYHNYAIDWQTGAGCDAAGFFTVFASELS 455

  Fly   848 VYTLAVITLERNYAITHAIHLNKRLSLKQAGYIMSVGWVFALIMALMPLVGVSDYRKFAVCLPFE 912
            ||||..|||||.:.||||:.|..::.|:.|..:|.:||.||...||.|:.|:|.|.|.::|||.:
  Rat   456 VYTLTAITLERWHTITHAMQLECKVQLRHAASVMVLGWTFAFAAALFPIFGISSYMKVSICLPMD 520

  Fly   913 TTTGPASLTYVISLMFINGCAFLTLMGCYLKMYWAIRG-SQAWNTNDSRIAKRMALLVFTDFLCW 976
            ..: |.|..||::|:.:|..||:.:.|||..:|..:|. :...:::|::||||||.|:||||||.
  Rat   521 IDS-PLSQLYVMALLVLNVLAFVVICGCYTHIYLTVRNPTIVSSSSDTKIAKRMATLIFTDFLCM 584

  Fly   977 SPIAFFSITAIFGLQLISLEQAKIFTVFVLPLNSCCNPFLYAIMTKQFKKDCVTLCKHF 1035
            :||:||:|:|...:.||::.:|||..|...|:|||.|||||||.||.|::|...|...|
  Rat   585 APISFFAISASLKVPLITVSKAKILLVLFYPINSCANPFLYAIFTKNFRRDFFILLSKF 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 3/20 (15%)
LRR_RI 180..>383 CDD:238064 37/205 (18%)
leucine-rich repeat 183..204 CDD:275380 4/20 (20%)
LRR_8 203..263 CDD:290566 7/60 (12%)
leucine-rich repeat 205..228 CDD:275380 0/22 (0%)
leucine-rich repeat 229..252 CDD:275380 5/22 (23%)
LRR_8 252..311 CDD:290566 12/61 (20%)
leucine-rich repeat 253..276 CDD:275380 5/23 (22%)
leucine-rich repeat 277..300 CDD:275380 6/24 (25%)
LRR_8 299..359 CDD:290566 13/59 (22%)
leucine-rich repeat 301..324 CDD:275380 4/22 (18%)
leucine-rich repeat 325..348 CDD:275380 7/22 (32%)
LRR_RI 327..567 CDD:238064 41/241 (17%)
leucine-rich repeat 349..371 CDD:275380 1/21 (5%)
LRR_8 370..425 CDD:290566 8/55 (15%)
leucine-rich repeat 372..393 CDD:275380 2/20 (10%)
leucine-rich repeat 394..415 CDD:275380 4/21 (19%)
leucine-rich repeat 418..486 CDD:275380 1/67 (1%)
leucine-rich repeat 441..464 CDD:275378 0/22 (0%)
LRR_8 487..545 CDD:290566 24/58 (41%)
leucine-rich repeat 487..510 CDD:275380 10/22 (45%)
leucine-rich repeat 511..534 CDD:275380 11/23 (48%)
LRR_8 533..589 CDD:290566 8/55 (15%)
leucine-rich repeat 535..558 CDD:275380 2/22 (9%)
leucine-rich repeat 559..580 CDD:275380 4/20 (20%)
7tm_4 764..>892 CDD:304433 61/127 (48%)
7tm_1 770..1017 CDD:278431 116/247 (47%)
FshrNP_954707.1 LRRNT 23..50 CDD:214470 7/30 (23%)
LRR 1 49..72 9/70 (13%)
LRR_8 72..132 CDD:290566 22/92 (24%)
leucine-rich repeat 72..96 CDD:275380 5/23 (22%)
LRR 2 73..97 4/23 (17%)
leucine-rich repeat 97..121 CDD:275380 10/48 (21%)
LRR 3 98..118 9/44 (20%)
LRR 4 119..143 10/48 (21%)
leucine-rich repeat 122..143 CDD:275380 9/45 (20%)
leucine-rich repeat 144..171 CDD:275380 8/94 (9%)
LRR 5 144..169 7/44 (16%)
LRR 6 170..192 9/41 (22%)
leucine-rich repeat 172..194 CDD:275380 11/42 (26%)
LRR_8 193..245 CDD:290566 19/75 (25%)
LRR 7 193..216 10/22 (45%)
leucine-rich repeat 195..219 CDD:275380 11/23 (48%)
LRR 8 217..240 6/46 (13%)
leucine-rich repeat 220..243 CDD:275380 7/46 (15%)
LRR 9 241..259 4/17 (24%)
GnHR_trans 282..348 CDD:289164 16/81 (20%)
7tm_1 378..625 CDD:278431 116/247 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2087
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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