DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and Lrrc8d

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_001116240.1 Gene:Lrrc8d / 231549 MGIID:1922368 Length:859 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064
leucine-rich repeat 183..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..311 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
LRR_8 299..359 CDD:290566
leucine-rich repeat 301..324 CDD:275380
leucine-rich repeat 325..348 CDD:275380
LRR_RI 327..567 CDD:238064
leucine-rich repeat 349..371 CDD:275380
LRR_8 370..425 CDD:290566
leucine-rich repeat 372..393 CDD:275380
leucine-rich repeat 394..415 CDD:275380
leucine-rich repeat 418..486 CDD:275380
leucine-rich repeat 441..464 CDD:275378
LRR_8 487..545 CDD:290566
leucine-rich repeat 487..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
LRR_8 533..589 CDD:290566
leucine-rich repeat 535..558 CDD:275380
leucine-rich repeat 559..580 CDD:275380
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
Lrrc8dNP_001116240.1 Pannexin_like 1..385 CDD:403656
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 110..138
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..252
inl_like_NEAT_1 <457..>703 CDD:411101
LRR 1 515..535
leucine-rich repeat 516..537 CDD:275378
LRR 2 539..560
LRR 3 562..583
leucine-rich repeat 563..590 CDD:275380
LRR 4 590..610
leucine-rich repeat 591..613 CDD:275380
LRR 597..>826 CDD:227223
LRR 5 613..633
leucine-rich repeat 614..629 CDD:275380
LRR 6 637..658
leucine-rich repeat 638..660 CDD:275380
LRR 7 660..681
leucine-rich repeat 661..685 CDD:275380
LRR 8 685..706
leucine-rich repeat 686..708 CDD:275380
LRR 9 708..729
leucine-rich repeat 709..731 CDD:275380
LRR 10 731..752
leucine-rich repeat 732..754 CDD:275380
LRR 11 754..775
leucine-rich repeat 755..777 CDD:275380
LRR 12 777..798
leucine-rich repeat 778..800 CDD:275380
LRR 13 800..821
leucine-rich repeat 801..821 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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